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Report for CCDS88665.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88665.1 Public Mus musculus 14 Rnf212b 23 108 98 CCDS HistoryNCBI Gene:102632837Re-query CCDS DB by CCDS ID:88665.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88665.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000218311.1 ENSMUSP00000151344.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218311.1Link to Ensembl Protein Viewer:ENSMUSP00000151344.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218311Re-query CCDS DB by Protein ID:ENSMUSP00000151344
Original member Current member NCBI NM_001370899.1 NP_001357828.1 Accepted alive Link to Nucleotide Sequence:NM_001370899.1Link to Protein Sequence:NP_001357828.1Re-query CCDS DB by Nucleotide ID:NM_001370899Re-query CCDS DB by Protein ID:NP_001357828Link to BLAST:NP_001357828.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357828.1 297 D3Z423 297 100% 0 0

Chromosomal Locations for CCDS 88665.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54816487 54816586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54819537 54819589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54820138 54820212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54838113 54838228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54839225 54839285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54840267 54840295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54841883 54841929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54842139 54842181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54842349 54842409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54842787 54842835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54848667 54848706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54849295 54849389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54850536 54850597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54853872 54853934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGATTGGTTTCATTGCAACCAGTGTTTCCGAAAAGATGGGGCCCATTTCTTTGTCACCAGCTGTGGCC
ATATTTTCTGTAAAAAGTGTATGACTTTGGAAAAATGTGCTGTTTGTGGAAATCTTTGCAAGCATCTGGC
TCTTTCTGATAATCTAAAGCCTCAAGAAAAGAAGTTCTTCAAAAGCCCTGTAGAGACAGCTTTGCAATGC
TTTAGTCACATCTCTCAGGTGTGGTGCTTTCAGAAGAAACAAACAGATCTTCTTATTGCCTTTTATAAGG
ACAGAATTACAAAGTTAGAAGCAGCTGTGAAGGAGGCCCAGGAAATGGCGGCCAGCCAGAACAAAGAGCT
ATCAGCCTTAAGAAAGGAGAATGGAGAACTGAAGAAAATTCTAGACATCCTAAAGGGATCTCCAAGCTGC
TACTATGGAAGCAGGTTAACCACACCTCGACCCGTGGGTATTACTTCCCCATCACAGTCAGTTGCTCCAC
GACCCAGTTCCCACCATAGCAGCCAAGTAGTCAGTCGCTCTTCTTCTATGGAGTCCATCCCTTACACAGT
GGCTGGCATGGGTCACGTGGAACAGGGAAGCAGAGGTCTGCACGTAAGGAGCACTCCTGGAGACTCTTAC
ACTGAAACCCCTTCTCCAGCTTCAACTCATAGCCTCTCTTACAGACCTTCGTCTGCCTCCTCCGGACAGG
GGGTTTCTTTTAGGCCATTCTTCAGTGGGGATTCAGGCCACACAAGAGTCCTCACTCCCAACAATTCTGG
TCGGAGGGAAAGCAGAACCACACCAGAGAGTCTTCCTGGTTTCCAACTTCCAGTCCTACAGACGTTCTAC
CAACAGAGGCAGATGGGACTAGCCAGGAAAGACGGATGGAACATTTCCAGATAG

Translation (297 aa):
MDWFHCNQCFRKDGAHFFVTSCGHIFCKKCMTLEKCAVCGNLCKHLALSDNLKPQEKKFFKSPVETALQC
FSHISQVWCFQKKQTDLLIAFYKDRITKLEAAVKEAQEMAASQNKELSALRKENGELKKILDILKGSPSC
YYGSRLTTPRPVGITSPSQSVAPRPSSHHSSQVVSRSSSMESIPYTVAGMGHVEQGSRGLHVRSTPGDSY
TETPSPASTHSLSYRPSSASSGQGVSFRPFFSGDSGHTRVLTPNNSGRRESRTTPESLPGFQLPVLQTFY
QQRQMGLARKDGWNISR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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