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Report for CCDS40817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40817.1 Public Mus musculus 9 Slc6a20a 23 108 98 CCDS HistoryNCBI Gene:102680Re-query CCDS DB by CCDS ID:40817.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040960.12 ENSMUSP00000047690.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040960.12Link to Ensembl Protein Viewer:ENSMUSP00000047690.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040960Re-query CCDS DB by Protein ID:ENSMUSP00000047690
Original member Current member NCBI NM_139142.2 NP_631881.1 Accepted alive Link to Nucleotide Sequence:NM_139142.2Link to Protein Sequence:NP_631881.1Re-query CCDS DB by Nucleotide ID:NM_139142Re-query CCDS DB by Protein ID:NP_631881Link to BLAST:NP_631881.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631881.1 592 Q8VDB9 592 100% 0 0

Chromosomal Locations for CCDS 40817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123636996 123637145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123637793 123637958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123640568 123640727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123641710 123641914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123655003 123655165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123656221 123656462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123657402 123657512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123660395 123660622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123662949 123663040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123664553 123664693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123678686 123678806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGGAGAAGGCACGGCCTCAGTGGGGCCATCCGCTGCAGTTCGTGTTCGCCTGCATCTCCTACGCCGTGG
GTTTGGGCAACGTGTGGCGCTTCCCTTACCTGTGCCAGATGTACGGCGGAGGGAGTTTCCTGGTCCCCTA
CATCATCATGCTCATTGTGGAGGGGATGCCACTCCTGTACCTGGAGCTGGCCGTGGGACAGCGCATGCGG
CAGGGCAGCATTGGTGCCTGGAGGACCATCAGCCCCTACCTCAGTGGTGTCGGTGTTGCCAGTGTTGTGG
TCTCCTTCTTCCTCTCCATGTACTACAATGTCATCAATGCCTGGGGCTTCTGGTACCTCTTCCACTCCTT
CCAGGATCCCCTGCCGTGGTCTGTCTGCCCACTGAACAGCAACCACACAGGCTACGATGAGGAGTGTGAG
AAGGCTTCGTCGACACAGTACTTCTGGTACAGGAAAACACTCAACATCTCACCGTCCATCCAGGAGAATG
GAGGAGTGCAGTGGGAGCCAGCGCTGTGCCTCACCCTGGCCTGGCTGATGGTCTATCTGTGCATCCTGAG
AGGCACCGAATCTACTGGCAAGGTGGTCTACTTCACCGCATCGATGCCTTACTGTGTTCTTATTATCTAC
TTGGTCCGTGGCCTTACACTCCATGGAGCCACCAATGGCCTGATGTACATGTTCACACCTAAGATGGAAC
AGCTAGCCAACCCCAAGGCCTGGATCAATGCAGCCACGCAGATCTTCTTCTCACTGGGCTTGGGTTTTGG
CAGCCTGATCGCTTTTGCCAGCTACAATGAACCCTCCAACAACTGCCAGAAGCATGCCATTATTGTGTCC
ATCATCAACAGCTCCACCTCCATATTTGCCAGCATTGTCACCTTCTCCATCTATGGCTTCAAGGCCACCT
TCAACTATGAAAACTGCTTAAACAAGGTGATTCTGCTGCTGACCAATTCTTTTGACCTTGAAGATGGCTT
TCTGACAGTCAGCAACCTGGAGGAGGTGAAGAACTACCTGGCATCTACTTACCCAAACAAGTACAGTGAA
GTGTTCCCACACATTAGAAACTGCAGCTTGGAATCAGAGCTGGACACGGCTGTCCAGGGCACAGGCCTGG
CCTTCATCGTCTACACTGAGGCCATTAAAAACATGGAAGTTTCCCAGCTCTGGTCAGTGCTCTACTTCTT
CATGCTGCTGATGCTGGGTATCGGAAGCATGCTTGGAAACACAGCGGCCATCCTCACCCCTCTGACTGAC
AGCAAGGTCATCTCCAGCTACCTGCCCAAGGAGGCCATTTCAGGTTTGGTATGCCTCATCAACTGTGCTG
TTGGCATGGTGTTCACCATGGAGGCTGGGAACTACTGGTTTGACATATTCAATGACTATGCGGCCACCCT
GTCTCTGCTGCTCATTGTGCTGGTAGAGACCATAGCTGTGTGCTATGTGTATGGGCTGAAGAGATTTGAA
AGTGACCTTCGGGCCATGACTGGCCGCACCCTCAGCTGGTACTGGAAGGTCATGTGGGCGTTTGTGAGTC
CACTGCTCATCGTCGGCCTCTTTATCTTCTACCTGAGTGACTACATCCTCACGGGAACACTGCAGTACCA
AGCCTGGGATGCTACTCAGGGGCAGTTGGTGACCAAGGATTACCCCCCACATGCGCTAGCTGTCATCGGT
TTGCTGGTGGCTTCATCTACCATGTGCATCCCCCTGGTGGCCCTGGGGACTTTCATCAGGAATCGCCTCA
AGAGGGGAGGCTCTGCCCCAGTGGCCTAA

Translation (592 aa):
MEKARPQWGHPLQFVFACISYAVGLGNVWRFPYLCQMYGGGSFLVPYIIMLIVEGMPLLYLELAVGQRMR
QGSIGAWRTISPYLSGVGVASVVVSFFLSMYYNVINAWGFWYLFHSFQDPLPWSVCPLNSNHTGYDEECE
KASSTQYFWYRKTLNISPSIQENGGVQWEPALCLTLAWLMVYLCILRGTESTGKVVYFTASMPYCVLIIY
LVRGLTLHGATNGLMYMFTPKMEQLANPKAWINAATQIFFSLGLGFGSLIAFASYNEPSNNCQKHAIIVS
IINSSTSIFASIVTFSIYGFKATFNYENCLNKVILLLTNSFDLEDGFLTVSNLEEVKNYLASTYPNKYSE
VFPHIRNCSLESELDTAVQGTGLAFIVYTEAIKNMEVSQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTD
SKVISSYLPKEAISGLVCLINCAVGMVFTMEAGNYWFDIFNDYAATLSLLLIVLVETIAVCYVYGLKRFE
SDLRAMTGRTLSWYWKVMWAFVSPLLIVGLFIFYLSDYILTGTLQYQAWDATQGQLVTKDYPPHALAVIG
LLVASSTMCIPLVALGTFIRNRLKRGGSAPVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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