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Report for CCDS10788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10788.1 Public Homo sapiens 16 KATNB1 24 110 108 CCDS HistoryNCBI Gene:10300Re-query CCDS DB by CCDS ID:10788.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10788.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379661.8 ENSP00000368982.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379661.8Link to Ensembl Protein Viewer:ENSP00000368982.3Re-query CCDS DB by Nucleotide ID:ENST00000379661Re-query CCDS DB by Protein ID:ENSP00000368982
Original member Current member NCBI NM_005886.3 NP_005877.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005886.3Link to Protein Sequence:NP_005877.2Re-query CCDS DB by Nucleotide ID:NM_005886Re-query CCDS DB by Protein ID:NP_005877Link to BLAST:NP_005877.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005877.2 655 Q9BVA0 655 100% 0 0

Chromosomal Locations for CCDS 10788.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 57737244 57737283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57741687 57741817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57744394 57744511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57750827 57750927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57751261 57751302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57751641 57751724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57751940 57752055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57752530 57752601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57752778 57752928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57753077 57753267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57753389 57753519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57753945 57753995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57754930 57754997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57755119 57755238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57755345 57755494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57755841 57755917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57755992 57756066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57756356 57756472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57756814 57756946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGGCCACCCCTGTGGTCACCAAGACAGCCTGGAAGTTGCAAGAGATCGTCGCGCATGCCAGCAACGTGT
CCTCACTGGTGCTGGGCAAAGCCTCCGGGCGGCTGCTGGCTACAGGCGGGGATGACTGCCGCGTCAACCT
GTGGTCCATCAACAAGCCCAACTGCATCATGAGCCTGACGGGCCACACATCCCCAGTGGAGAGCGTCCGC
CTCAACACCCCCGAGGAGCTCATCGTGGCCGGCTCTCAGTCGGGCTCCATCCGTGTCTGGGACCTGGAAG
CTGCCAAAATTCTTCGCACACTCATGGGACACAAAGCCAACATCTGCAGCCTGGATTTCCACCCGTACGG
CGAGTTTGTAGCCTCTGGTTCCCAGGACACAAACATCAAGCTCTGGGACATCAGGAGGAAAGGCTGTGTC
TTCCGATACAGGGGGCACAGCCAGGCCGTGCGGTGTCTCCGGTTCAGCCCCGATGGGAAGTGGTTGGCGT
CGGCCGCAGATGACCACACCGTGAAGCTCTGGGATCTCACTGCCGGCAAGATGATGTCTGAGTTCCCTGG
TCACACGGGGCCTGTCAACGTGGTCGAGTTTCACCCCAACGAGTACCTCCTGGCCTCCGGCAGCTCTGAC
AGGACAATCCGCTTCTGGGACCTGGAGAAGTTCCAGGTGGTGAGCTGCATCGAAGGGGAGCCTGGGCCCG
TCAGGAGCGTCCTCTTCAACCCAGACGGCTGCTGCCTGTACAGCGGCTGCCAGGACTCACTGCGTGTCTA
CGGCTGGGAACCTGAGCGGTGCTTTGATGTGGTCCTCGTCAACTGGGGCAAGGTGGCCGACCTGGCCATC
TGCAATGACCAGTTGATAGGTGTGGCCTTCTCCCAGAGCAACGTCTCCTCCTACGTGGTGGATCTGACGC
GTGTCACCAGGACTGGCACGGTGGCCCGGGACCCTGTGCAGGACCACCGGCCCCTGGCACAGCCACTGCC
CAACCCCAGCGCCCCCCTCCGGCGCATCTATGAGCGGCCCAGCACAACCTGCAGCAAGCCTCAGAGGGTG
AAGCAGAACTCAGAGAGCGAGCGCCGCAGCCCCAGCAGCGAGGATGACCGGGACGAGCGCGAGTCCCGCG
CGGAGATCCAGAACGCCGAGGACTACAACGAGATCTTCCAGCCCAAGAACAGCATCAGTCGGACGCCACC
CCGGAGAAGTGAGCCCTTCCCTGCACCCCCAGAGGACGACGCAGCCACAGCAAAGGAGGCAGCAAAGCCC
AGCCCTGCCATGGATGTGCAGTTCCCGGTGCCAAATCTGGAGGTCCTGCCCCGGCCCCCAGTGGTTGCTT
CCACACCTGCACCCAAGGCTGAGCCTGCCATCATCCCTGCCACCCGGAACGAGCCCATCGGGCTGAAGGC
CTCCGACTTCCTGCCCGCCGTGAAGATCCCCCAGCAGGCCGAGCTGGTGGACGAGGATGCCATGTCACAG
ATCCGCAAAGGCCACGACACCATGTGTGTGGTGCTCACCAGCCGCCACAAGAACCTGGACACTGTGCGGG
CTGTGTGGACCATGGGCGACATCAAGACGTCGGTGGACTCCGCTGTGGCCATCAACGACCTGTCGGTGGT
GGTGGACCTCCTGAACATCGTCAACCAGAAAGCCTCCCTGTGGAAGCTGGACCTGTGCACCACCGTCCTG
CCACAGATTGAGAAGCTTCTGCAGAGCAAGTATGAGAGCTACGTCCAGACGGGCTGCACCTCCCTGAAGC
TGATCCTGCAGCGGTTTCTGCCCCTCATCACAGACATGCTGGCGGCCCCACCCTCTGTGGGTGTGGATAT
CAGCAGGGAGGAGAGGCTGCATAAGTGCCGGCTCTGCTACAAGCAGCTTAAGAGCATCAGCGGCCTGGTC
AAGAGCAAGTCAGGCCTGAGCGGCCGCCATGGCAGTACCTTCCGCGAGCTGCACCTGCTCATGGCCAGTC
TGGACTGA

Translation (655 aa):
MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVR
LNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCV
FRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSD
RTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAI
CNDQLIGVAFSQSNVSSYVVDLTRVTRTGTVARDPVQDHRPLAQPLPNPSAPLRRIYERPSTTCSKPQRV
KQNSESERRSPSSEDDRDERESRAEIQNAEDYNEIFQPKNSISRTPPRRSEPFPAPPEDDAATAKEAAKP
SPAMDVQFPVPNLEVLPRPPVVASTPAPKAEPAIIPATRNEPIGLKASDFLPAVKIPQQAELVDEDAMSQ
IRKGHDTMCVVLTSRHKNLDTVRAVWTMGDIKTSVDSAVAINDLSVVVDLLNIVNQKASLWKLDLCTTVL
PQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDMLAAPPSVGVDISREERLHKCRLCYKQLKSISGLV
KSKSGLSGRHGSTFRELHLLMASLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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