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Report for CCDS85049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85049.1 Public Mus musculus 6 Creb5 23 108 98 CCDS HistoryNCBI Gene:231991Re-query CCDS DB by CCDS ID:85049.1Re-query CCDS DB by GeneID:231991See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047450.9 ENSMUSP00000038532.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047450.9Link to Ensembl Protein Viewer:ENSMUSP00000038532.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000047450Re-query CCDS DB by Protein ID:ENSMUSP00000038532
Original member Current member EBI ENSMUST00000203528.2 ENSMUSP00000144979.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203528.2Link to Ensembl Protein Viewer:ENSMUSP00000144979.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203528Re-query CCDS DB by Protein ID:ENSMUSP00000144979
Original member Current member NCBI NM_001327821.1 NP_001314750.1 Accepted alive Link to Nucleotide Sequence:NM_001327821.1Link to Protein Sequence:NP_001314750.1Re-query CCDS DB by Nucleotide ID:NM_001327821Re-query CCDS DB by Protein ID:NP_001314750Link to BLAST:NP_001314750.1

Chromosomal Locations for CCDS 85049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 53369805 53369858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53375939 53376032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53388785 53388906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53447546 53447718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53604462 53604588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53610422 53610532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53680936 53681259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53685293 53685520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53692899 53693007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 53693924 53694087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGAACTTGGAGCAGGAGAGGCCGTTTGTCTGCAGTGCCCCAGGCTGCTCCCAGCGTTTCCCAACAGAGG
ACCATCTGATGATTCATAGGCACAAGCACGAGATGACTTTGAAGTTCCCTTCAATAAAGACAGACAATAT
GCTGTCAGATCAGACTCCGACGCCCACAAGATTCCTGAAGAACTGTGAAGAGGTGGGTCTCTTCAGCGAG
CTGGACTGCTCCTTTGAGCACGAGTTCAGGAAGGCTCAAGAGGAAGAGAACAGCAAGCGGAATATCTCCA
TGCATAATACAGTTGGTGGGACCATGACGGGACCCGGAGCTCACCAGCTAGGCAGCACTCGGATGCCCAA
CCATGACAGCAGCGTTGTGATTCAGCAAGCCATGCCTTCTCCCCAGTCCAGCTCGGTCATCACTCAGGCT
CCTTCCACCAACCGCCAGATTGGGCCTGTCCCAGGCTCTCTATCATCTCTACTCCATCTCCACAACAGAC
AGAGGCAGCCCATGCCGGCCTCCATGCCTGGAACCCTGCCCAACCCCACCATGCCAGGATCTTCTGCCGT
CTTGATGCCTATGGAGAGACAGATGTCAGTGAACTCCAGCATCATGGGCATGCAAGGTCCAAACCTCAGC
AACCCCTGTGCTTCTCCCCAAGTCCAGCCAATGCATTCAGAAGCCAAAATGAGACTGAAGGCTGCGCTGA
CTCACCATCCTGCCGCCATGTCGAACGGGAACATGAGCACCATCGGACACATGATGGAGATGATGGGCTC
CCGGCAAGACCAGACACCGCACCACCACCTGCACTCACACCCGCATCAGCACCAGACACTGCCGCCCCAC
CACCCCTACCCACACCAGCACCAGCACCCCGCACACCATCCCCACCCACAGCCTCACCACCAGCAGAACC
ACCCGCACCACCACTCCCATTCCCACCTTCACGCACACCCGGCGCACCACCAGACCTCGCCACACCCACC
CCTGCCCACCGGCAACCAAGCACAGGTTTCACCAGCTACACAACAGATGCAGCCAACCCAGACAATACAA
CCGCCCCAGCCCACAGGGGGACGCCGGCGAAGAGTGGTGGATGAGGACCCAGATGAGAGGCGGAGGAAAT
TTCTGGAAAGGAACCGGGCCGCCGCCACCCGCTGCAGACAGAAGAGGAAGGTCTGGGTGATGTCACTGGA
AAAGAAAGCTGAAGAGCTCACCCAGACAAACATGCAGCTTCAGAATGAAGTGTCCATGTTGAAAAACGAG
GTGGCCCAGCTGAAGCAGTTGTTGTTAACACATAAAGACTGTCCGATAACAGCCATGCAGAAAGAATCCC
AAGGGTATTTAAGTCCAGAGAGCAGCCCTCCTGCGAGCCCTGTGCCAGCATGCTCTCAGCAGCAAGTTAT
CCAACACAACACCATCACTACATCCTCATCGGTCAGCGAGGTCGTGGGGAGCTCCACCCTCAGTCAGCTT
ACAACTCACAGAACAGACCTGAATCCTATTCTTTAA

Translation (501 aa):
MNLEQERPFVCSAPGCSQRFPTEDHLMIHRHKHEMTLKFPSIKTDNMLSDQTPTPTRFLKNCEEVGLFSE
LDCSFEHEFRKAQEEENSKRNISMHNTVGGTMTGPGAHQLGSTRMPNHDSSVVIQQAMPSPQSSSVITQA
PSTNRQIGPVPGSLSSLLHLHNRQRQPMPASMPGTLPNPTMPGSSAVLMPMERQMSVNSSIMGMQGPNLS
NPCASPQVQPMHSEAKMRLKAALTHHPAAMSNGNMSTIGHMMEMMGSRQDQTPHHHLHSHPHQHQTLPPH
HPYPHQHQHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPLPTGNQAQVSPATQQMQPTQTIQ
PPQPTGGRRRRVVDEDPDERRRKFLERNRAAATRCRQKRKVWVMSLEKKAEELTQTNMQLQNEVSMLKNE
VAQLKQLLLTHKDCPITAMQKESQGYLSPESSPPASPVPACSQQQVIQHNTITTSSSVSEVVGSSTLSQL
TTHRTDLNPIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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