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Report for CCDS25039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25039.1 Public Mus musculus 11 Smg6 23 108 98 CCDS HistoryNCBI Gene:103677Re-query CCDS DB by CCDS ID:25039.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25039.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045281.12 ENSMUSP00000043555.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045281.12Link to Ensembl Protein Viewer:ENSMUSP00000043555.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000045281Re-query CCDS DB by Protein ID:ENSMUSP00000043555
Original member Current member NCBI NM_001002764.2 NP_001002764.1 Accepted alive Link to Nucleotide Sequence:NM_001002764.2Link to Protein Sequence:NP_001002764.1Re-query CCDS DB by Nucleotide ID:NM_001002764Re-query CCDS DB by Protein ID:NP_001002764Link to BLAST:NP_001002764.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002764.1 1418 P61406 1418 100% 0 0

Chromosomal Locations for CCDS 25039.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74925916 74926003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74928993 74930748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74931577 74931769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74932341 74932451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74934995 74935101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74935359 74935437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74945522 74945632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74946007 74946219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74981852 74981913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74990070 74990215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75038613 75038729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75041868 75042036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75053762 75053963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75139193 75139369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75142757 75142903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75156161 75156314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75159176 75159387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75159825 75159906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75162820 75162950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4257 nt):
ATGGCGGAGGGGTTGGAGCGTGTGCGGATCTCCGCATCGGAACTGCGAGGGATCCTGGCCACTCTGGCTC
CGCAGGCCGGGAGCAGAGAAAACATGAAGGAACTAAAGGAACCCAGACAGCGCAAAGATAATAGGCGTCC
AGATTTGGAAATCTATAAGCCTGGACTTTCTCGACTAAGGAACAGACCTAAAACTAAGGAGGCTTCTGGG
AATGAGGAATTTAAGGATGAGATAGTAAATGACAGAGATTCTTCTGCTGTTGGGAATGATACACAGCTTA
TTCAAGTTTGCAAGGAATTGGACAGCCAACAGCAAAATGGCCCTATAGATGCAGAAAATAGTCAGGCACA
GGAAACTTTTCCAAAGACTGTTGGACTAGAGGACCGAAGTCTAAAGATCATCAAAAGAAGCAAGAAACCA
GACCTGCAGATCTACCAGCCTGGAAGGCGGTTGCAGACCATTACCAAAGAGTCAGCAGGCAGGGCAGATG
AAGAAGAGATCCTCAACCAAGTGGAGCAGTTGAGGATAGAGGAGGATGAGTGTAAGGGAGAAGCTATAAA
AGAAGAAGTTAATAACAAACCGGATAAAACCGAGATAGAAAAGCACCAAAGTAATGACCGTGTAAGAACT
GCCAAGGGAGAAAAGGGAAAAAAGATTGAAAAGGGGGAGGGGTCAAAGAAGGTGGCTGATGACTCTGTCC
CAGGAAAGCCTGGCTCTGTAAAGAGATACTCGAGATCAGACAAGAGAAGGAATCGCTACCGCACTTGCAG
TACCAGCTCAGCTGGTAGCAACAACAGTGCTGAGGGAGCTGGCCTGACCGATAATGGATGTCGCCGGCGG
CGCCAGGATCGGGCCAAGGAGAGGCCACGACTGAAGAAGCAGGTATCTTTGTCCTCAACTGATTCCTTAG
ATGAGGACAGAGTTGATGAGCCTGATGTCCTAGGGTCCAGGAGGAGCTCAGAAAGGAAGAAGCATTTAGA
AAGAAATTGGTCTGGCTGTGGTGAGGGTGAACAGAAAAGCAATGGTAAAGAAAACCGAAGTGCCCTTCGT
GTCACTTTTGATGCAGAAACCATGAGTAAAGACTCCCCTGTGGTGAGGTCAGTCAAAGATAATGTGGATA
GAATGAAGTCTGACAAAGGCCCAAGCAGTGGGGGTAAGGGCTCTGAGAAGCAGGAGCTCAGACACCCGAG
ACAAGAACTTCGAGATCGTGGTCGTGGTATCCTGATTCTGCCTGCCCACACTGCCCTATCTGTCAGTTCA
TCAGGTTCTCCGGAGTCTACACCTTTGGGACCTCGACTTTTATTTGGATCTGGTAGTAAGGGATCTCGGA
GTTGGGGCCGTGGAGGCACTACCCGCCGACTATGGGACCCAAACAATCCTGACCAGAAGCCTGCCCTAAA
AAGCCAGACACCTCAGCTACATTTCTTGGACACTGATGATGAAATTAGCCCTACATCTTGGGGTGATTCA
CGTCAGGCCCAAGCATCTTACTATAAATTTCAAAACTCTGATAACCCCTATTATTACCCTCGGACACCAG
GCCCTGCCTCTCAGTATCCCTATGCAGGCTATAGCCCTCTGCAGTACCCAGTAGGCCCTACAAATGGTAT
GTATCCAGGGGCTTACTACCCGGGCTATCCTGCCCCCTCAGGACAATATGTGTGTAGCCCTCTCCCTGCT
AGCACCATGAGTCCTGAGGAAATAGAACAGCACGTGCGGAACATGCAGCAACAGGAGCTCCATCGGCTTC
TCCGAGTGGCTGACAACCAGGAACTGCAGCTCAGCAACCTGCTTTCCAGGGACCGCATCAGCACTGAGGG
CATGGAGAAGATGGCTCAGCTCAGAACTGAACTACTGCAGCTGTACGAGCGCTGTATTCTATTAGATATT
GAATTCTCCGACAGTCAGAATGTAGATCAGATCCTGTGGAAGAACGCTTTCTATCAGGTGATTGAGAAGT
TCAGGCAGCTTCTCAAGGATCCAAACAGTGAGAACCCAGAGCAGATTCGGAACAGACTCTTGGAGCTCTT
AGATGAGGGCAGTGACTTCTTTGATAGTTTGCTTCAGAAACTACAGGTTACTTACAAGTTCAAACTGGAG
GACTACATGGATGGGCTTGCCATTCGAAGCAAGCCTTTACGAAAAACAGTGAAATATGCCTTGATCAGTG
CTCAACGAAGTATGATTTGCCAAGGAGATATCTCTAGGTATCGGGAGCAAGCCAACGATACAGCAAACTA
TGGGAAGGCTCGCAGTTGGTATCTGAAGGCTCAGCACATTGCTCCCAAGAATGGGCGCCCCTATAACCAG
TTGGCTCTACTGGCAGTGTATACGAGGAGGAAGCTTGATGCTGTATATTACTATATGCGCAGTTTAGCAG
CCAGCAACCCTATCCTGACTGCCAAGGAGAGTCTCATGAGTTTATTTGAAGAGACTAAACGAAAGGCTGA
ACAGATGGAAAAGAAGCAGCATGAGGAATTTGATATGAGCCCTGATAAGTGGCGAAAAGGAAAGAAGTCT
ACTTTCCGGCATGTTGGGGATGACACTACTCGCCTGGAGATTTGGATTCATCCATCACATTCTCGGTCTG
CCCAGGGCACTGAGTCTGGGAAGGATTCTGAGCAGGAGAATGGTCTGGGCAGCCTGAGTCCCAGTGATCT
GAACAAAAGGTTCATCCTCAGTTTTCTCCATGCCCATGGGAAGCTGTTTACCCGGATTGGGATGGAGACA
TTCCCTGCAGTGGCTGAGAAGGTCCTTAAGGAGTTCCAAGTATTGCTGCAGCATAGCCCATCTCCTATTG
GAAGTACCCGTATGCTGCAGCTTATGACCATCAACATGTTTGCCGTGCATAACTCCCAGTTGAAAGACTG
CTTCTCAGAGGAGTGTCGTTCTGTGATCCAGGAACAAGCTGCATCCTTGGGCTTGGCTATGTTTTCTCTA
CTGGTCCAGCGCTGCACATGCCTACTTAAGGACTCTGCTAAAGCTCAGCTGTCCTCTCCTGAGGACCAAG
AGGACCAAGATGACATCAAGGTATCTTCCTTCGTCCCGGACCTGAAGGAGCTGCTCCCCAGTGTGAAAGT
CTGGTCTGATTGGATGCTTGGCTACCCAGACACCTGGAATCCTCCACCCACATCTTTGGATCTGCCCTTG
CAGGTTGCTGTGGATGTCTGGTCAACACTAGCTGATTTCTGTAACATACTGACTGCAGTCAATCAGTCTG
AGGTGCCACTGTACAAGGACCCAGATGATGACCTCACCCTGCTTATCCTGGAAGAGGATCGGCTTCTCTC
TGGCTTTGTCCCCTTGCTGGCTGCCCCTCAGGACCCCTGCTACGTGGAGAAAACCTCGGATAAGGTTATT
GCAGCTGACTGCAAAAGGGTCACAGTGCTGAAGTATTTTCTGGAAGCCCTTTGTGGACAAGAAGAGCCTC
TGCTGGCATTCAAGGGTGGAAAATATGTGTCAGTGGCACCCGTCCCAGACACCATGGGAAAGGAAATGGG
AAGCCAAGAGGGAAAACAACTGGAAGATGAGGAAGAAGATGTGGTGATTGAAGACTTTGAGGAAGATTCA
GAGGCTGAAGGCAGTGGGGGTGAGGATGACATCAGGGAACTTCGGGCCAAGAAGCTGGCTCTAGCAAGGA
AGATAGCTGAGCAGCAGCGTCGCCAGGAAAAGATCCAGGCTGTTTTGGAAGACCAGAGTCAGATGAGGCA
GATGGAGCTGGAGATCAGACCCTTGTTCCTCGTACCAGATACCAACGGCTTCATTGACCACCTGGCCAGT
CTGGCTCGGCTGCTGGAGAGCAGGAAGTACATCCTGGTGGTGCCCCTCATCGTGATCAATGAGCTGGACG
GCCTCGCCAAAGGGCAGGAGACAGACCACCGGGCTGGGGGCTATGCCCGTGTGGTGCAAGAAAAGGCCCG
AAAATCCATTGAGTTCCTCGAACGGAGATTTGAGAGTCGGGACTCCTGCCTGCGGGCCTTGACCAGCCGT
GGCAATGAACTTGAATCTATCGCCTTCCGAAGTGAGGACATTACTGGACAGCTGGGTAACAACGATGACC
TGATCCTCTCTTGCTGCCTGCACTACTGCAAAGACAAGGCTAAGGATTACATGCCCACCAGCAAAGAGGA
GCCAATCCGCCTGTTACGGGAGGTGGTGTTGCTGACCGATGATCGGAACCTTCGTGTAAAGGCGCTGACA
AGGAATGTGCCTGTGAGGGACATCCCAGCCTTCCTTACGTGGGCCCAGGTGGGCTGA

Translation (1418 aa):
MAEGLERVRISASELRGILATLAPQAGSRENMKELKEPRQRKDNRRPDLEIYKPGLSRLRNRPKTKEASG
NEEFKDEIVNDRDSSAVGNDTQLIQVCKELDSQQQNGPIDAENSQAQETFPKTVGLEDRSLKIIKRSKKP
DLQIYQPGRRLQTITKESAGRADEEEILNQVEQLRIEEDECKGEAIKEEVNNKPDKTEIEKHQSNDRVRT
AKGEKGKKIEKGEGSKKVADDSVPGKPGSVKRYSRSDKRRNRYRTCSTSSAGSNNSAEGAGLTDNGCRRR
RQDRAKERPRLKKQVSLSSTDSLDEDRVDEPDVLGSRRSSERKKHLERNWSGCGEGEQKSNGKENRSALR
VTFDAETMSKDSPVVRSVKDNVDRMKSDKGPSSGGKGSEKQELRHPRQELRDRGRGILILPAHTALSVSS
SGSPESTPLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKSQTPQLHFLDTDDEISPTSWGDS
RQAQASYYKFQNSDNPYYYPRTPGPASQYPYAGYSPLQYPVGPTNGMYPGAYYPGYPAPSGQYVCSPLPA
STMSPEEIEQHVRNMQQQELHRLLRVADNQELQLSNLLSRDRISTEGMEKMAQLRTELLQLYERCILLDI
EFSDSQNVDQILWKNAFYQVIEKFRQLLKDPNSENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLE
DYMDGLAIRSKPLRKTVKYALISAQRSMICQGDISRYREQANDTANYGKARSWYLKAQHIAPKNGRPYNQ
LALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFDMSPDKWRKGKKS
TFRHVGDDTTRLEIWIHPSHSRSAQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHGKLFTRIGMET
FPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSEECRSVIQEQAASLGLAMFSL
LVQRCTCLLKDSAKAQLSSPEDQEDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPL
QVAVDVWSTLADFCNILTAVNQSEVPLYKDPDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVI
AADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSVAPVPDTMGKEMGSQEGKQLEDEEEDVVIEDFEEDS
EAEGSGGEDDIRELRAKKLALARKIAEQQRRQEKIQAVLEDQSQMRQMELEIRPLFLVPDTNGFIDHLAS
LARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLERRFESRDSCLRALTSR
GNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDYMPTSKEEPIRLLREVVLLTDDRNLRVKALT
RNVPVRDIPAFLTWAQVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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