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Report for CCDS25160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25160.1 Public Mus musculus 11 Pex12 23 108 98 CCDS HistoryNCBI Gene:103737Re-query CCDS DB by CCDS ID:25160.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018877.8 ENSMUSP00000018877.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018877.8Link to Ensembl Protein Viewer:ENSMUSP00000018877.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000018877Re-query CCDS DB by Protein ID:ENSMUSP00000018877
Original member Current member EBI ENSMUST00000108146.7 ENSMUSP00000103781.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108146.7Link to Ensembl Protein Viewer:ENSMUSP00000103781.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108146Re-query CCDS DB by Protein ID:ENSMUSP00000103781
Original member Current member EBI ENSMUST00000175741.7 ENSMUSP00000135145.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175741.7Link to Ensembl Protein Viewer:ENSMUSP00000135145.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175741Re-query CCDS DB by Protein ID:ENSMUSP00000135145
Original member Current member EBI ENSMUST00000176518.1 ENSMUSP00000135632.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176518.1Link to Ensembl Protein Viewer:ENSMUSP00000135632.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176518Re-query CCDS DB by Protein ID:ENSMUSP00000135632
Original member Current member NCBI NM_001364762.1 NP_001351691.1 Accepted alive Link to Nucleotide Sequence:NM_001364762.1Link to Protein Sequence:NP_001351691.1Re-query CCDS DB by Nucleotide ID:NM_001364762Re-query CCDS DB by Protein ID:NP_001351691Link to BLAST:NP_001351691.1
Original member Current member NCBI NM_001364763.1 NP_001351692.1 Accepted alive Link to Nucleotide Sequence:NM_001364763.1Link to Protein Sequence:NP_001351692.1Re-query CCDS DB by Nucleotide ID:NM_001364763Re-query CCDS DB by Protein ID:NP_001351692Link to BLAST:NP_001351692.1
Original member Current member NCBI NM_134025.4 NP_598786.1 Accepted alive Link to Nucleotide Sequence:NM_134025.4Link to Protein Sequence:NP_598786.1Re-query CCDS DB by Nucleotide ID:NM_134025Re-query CCDS DB by Protein ID:NP_598786Link to BLAST:NP_598786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351691.1 359 Q8VC48 359 100% 0 0
NP_001351692.1 359 Q8VC48 359 100% 0 0
NP_598786.1 359 Q8VC48 359 100% 0 0

Chromosomal Locations for CCDS 25160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83296041 83296440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83297488 83298041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83298316 83298441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGCTGAGTATGGGGCTCACATCACAACTGCTTCAGTGGCGGACGACCAGCCATCCATCTTTGAGGTGG
TAGCACAGGACAGTTTAATGACAGCAGTGAGACCCGCTCTTCAGCATGTGGTCAAGGTTCTTGCAGAATC
AAATCCTGCGCACTATGGCTTCCTCTGGCGGTGGTTTGATGAAATCTTCACTCTGCTAGACTTCCTGCTC
CAGCAGCATTATCTTTCTAGAACTAGTGCCTCATTTTCTGAACACTTTTATGGCTTAAAGCGGATTGTGG
CAGGGAGCTCGCCGCATCTTCAGAGACCGGCCAGTGCTGGTCTTCCCAAGGAACACCTCTGGAAATCTGC
CATGTTCCTTGTCCTTCTTCCCTATCTGAAAGTGAAGCTAGAGAAGCTGGCTTCTAGCTTGAGAGAAGAA
GACGAATACTCTATTCACCCCCCTTCTTCTCGCTGGAAACGATTCTACAGAGCCTTTCTGGCGGCCTACC
CTTTTGTTAACATGGCCTGGGAAGGCTGGTTTCTTACACAACAACTGCGTTACATCTTGGGGAAAGCTGA
GCATCACTCTCCCCTGCTGAAACTGGCTGGAGTTCGGTTAGCTCGACTGACAGCTCAGGACATGCAAGCT
ATCAAACAGAGACTGGTTGAAGCCAGTGCAATGCAGGAGCCCGTCAGAAGCGTTGGTGAGAAGATAAAGT
CAGCTCTGAAGAAAGCTGTGGGAGGTGTTGCCTTATCCCTCTCGACTGGCCTCTCTGTGGGTGTATTCTT
CCTGCAGTTTCTTGACTGGTGGTACTCTTCTGAGAACCAAGAAGCCATCAAATCACTGACTGCCCTGCCC
ACTCCACCACCACCTGTACACCTAGACTACAACTCTGATTCTCCCCTCTTACCCAAAATGAAAACAGTGT
GCCCACTCTGTCGTAAAACTCGAGTGAATGATACGGTTCTTGCCACCTCTGGCTATGTATTCTGTTACCG
CTGTGTGTTTAATTATGTGAGGAGTCACCAAGCCTGTCCCATTACAGGGTATCCAACAGAAGTCCAGCAT
CTAATTAAACTCTACTCTCCAGAGAACTGA

Translation (359 aa):
MAEYGAHITTASVADDQPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPAHYGFLWRWFDEIFTLLDFLL
QQHYLSRTSASFSEHFYGLKRIVAGSSPHLQRPASAGLPKEHLWKSAMFLVLLPYLKVKLEKLASSLREE
DEYSIHPPSSRWKRFYRAFLAAYPFVNMAWEGWFLTQQLRYILGKAEHHSPLLKLAGVRLARLTAQDMQA
IKQRLVEASAMQEPVRSVGEKIKSALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQEAIKSLTALP
TPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVFNYVRSHQACPITGYPTEVQH
LIKLYSPEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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