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Report for CCDS29010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29010.1 Public Mus musculus 17 Rhoq 23 108 98 CCDS HistoryNCBI Gene:104215Re-query CCDS DB by CCDS ID:29010.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024956.14 ENSMUSP00000024956.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024956.14Link to Ensembl Protein Viewer:ENSMUSP00000024956.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000024956Re-query CCDS DB by Protein ID:ENSMUSP00000024956
Original member NCBI NM_145491.2 NP_663466.2 Updated not alive Link to Nucleotide Sequence:NM_145491.2Link to Protein Sequence:NP_663466.2Re-query CCDS DB by Nucleotide ID:NM_145491Re-query CCDS DB by Protein ID:NP_663466
Current member NCBI NM_145491.3 NP_663466.2 Accepted alive Link to Nucleotide Sequence:NM_145491.3Link to Protein Sequence:NP_663466.2Re-query CCDS DB by Nucleotide ID:NM_145491Re-query CCDS DB by Protein ID:NP_663466Link to BLAST:NP_663466.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663466.2 205 Q8R527 205 100% 0 0

Chromosomal Locations for CCDS 29010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 86963606 86963747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86964300 86964358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86994559 86994723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86995004 86995099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 86996905 86997060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGCTCACGGGCCCGGCGCGCTGATGCTGAAGTGCGTGGTGGTCGGCGACGGGGCGGTGGGCAAGACGT
GCCTGCTCATGAGCTATGCCAACGACGCCTTCCCCGAGGAGTACGTGCCCACTGTCTTCGACCACTACGC
AGTCAGCGTCACCGTGGGGGGCAAGCAGTACCTCTTGGGACTCTATGACACAGCTGGACAGGAAGACTAT
GATCGTCTGAGGCCTTTATCTTACCCCATGACTGACGTCTTCCTCATATGCTTCTCCGTGGTAAATCCAG
CCTCGTTTCAAAATGTAAAGGAAGAGTGGGTACCAGAGCTAAAGGAATATGCGCCAAACGTCCCCTTCTT
GTTAATAGGAACTCAGATTGATCTCCGAGATGACCCCAAAACTTTAGCAAGACTGAATGACATGAAAGAA
AAACCTGTCTGTGTGGAACAAGGACAGAAACTAGCAAAAGAGATAGGTGCATGCTGCTATGTGGAGTGTT
CAGCTTTAACCCAGAAGGGTTTGAAGACTGTGTTTGATGAGGCTATCATAGCCATTTTAACTCCAAAGAA
ACACACAGTAAAAAAAAGAATAGGATCAAGATGTATAAACTGTTGTTTGATTACGTGA

Translation (205 aa):
MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY
DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKE
KPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHTVKKRIGSRCINCCLIT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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