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Report for CCDS39965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39965.1 Public Mus musculus 7 Uevld 23 108 98 CCDS HistoryNCBI Gene:54122Re-query CCDS DB by CCDS ID:39965.1Re-query CCDS DB by GeneID:54122See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094398.12 ENSMUSP00000091964.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094398.12Link to Ensembl Protein Viewer:ENSMUSP00000091964.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094398Re-query CCDS DB by Protein ID:ENSMUSP00000091964
Original member Current member NCBI NM_001040695.1 NP_001035785.1 Accepted alive Link to Nucleotide Sequence:NM_001040695.1Link to Protein Sequence:NP_001035785.1Re-query CCDS DB by Nucleotide ID:NM_001040695Re-query CCDS DB by Protein ID:NP_001035785Link to BLAST:NP_001035785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035785.1 471 Q3U1V6-1 471 100% 0 0

Chromosomal Locations for CCDS 39965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 46926321 46926488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46927421 46927544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46930989 46931052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46937891 46938064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46940133 46940303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46943788 46943890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46945231 46945349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46947913 46948048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46950828 46950991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46955024 46955089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46955618 46955702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 46958391 46958432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGAGTTCGACTGTGAGGGCGTGAGACGGCTGCTAGGCAAGTACAAGTTCAGGGATCTGACTGTGGAAG
AGCTGAAGAATGTGAGCGTGTCTTTCCCGCACTTCAGATACTCCGTGGACACCTATGTTTTCAAAGATAC
ATCCCAAAAAGACCTGCTGAATTTCACCGGTACAATTCCTGTGATGTATCAGGGTAAGACATACAACATA
CCCATTCGCTTCTGGATTTTGGATTCCCACCCTTTTGCTCCACCCATTTGCTTCTTGAAGCCAACTGCAA
ACATGGAAATCTCGGTTGGAAAACATGTGGATGCCAAAGGCAGAATATACTTGCCCTATCTCCAAAACTG
GAGCCACCCCAAATCTGCCATCGTTGGATTAATTAAAGAAATGATTGCCAAGTTTCAAGAGGAACTTCCT
CTCTATTCCATACCGTCGTCCAATGAAGCGCAACAGGTGGACTTGCTGGCCTATATCACAAAAATCACGG
AAGGTGTCTCAGACATAAATTCAAGGGGCTGGACAAATCATGAGAATAAAATACTCAATAAAATCACTGT
GGTTGGAAGTGGAGATTTGGGAATCGCCTGCACATTGGCAATTTCAGCAAAGGGCATTGCAGACAAGCTG
CTCCTCTTAGACCTCTCAGACGGGATGAGCCAAGGGACGATGGACCTTGATATCTTCAACCTGCCTAATG
TAGAGATCAGCAAAGATTTGTCTGCCTCTGCTCATTCCAAGGTGGTGATCTTCACAGCCAACTCTTTGGG
CGGTTCTGAATCCTATCTGCATGCAGTACAAAGTAATGTGGACATGTTCAGAGCTCTTGTTCCAGCTCTG
GGACACTATAGTCAACACGCTGTCTTGCTTGTTGCCTCTCAACCAGTGGAAATCATGAGCTATGTGACGT
GGAAGCTGAGCACATTTCCTGCGACTAGAGTGGTCGGGATTGGCTGCAATCTGGATTCACAGAGGCTGCA
GTACATTATCACCAGTGTTTTGAAGGTGCAGACTTCAGGCAAAGAAGTGTGGGTTGTTGGCGAACAGGGA
GAAAACAAAGTGTGCTCATGGAGTGGCCGAGATGGAGTACTGAGTCCCAGCTCTCAGGCACAGCTATCCA
GCAGAGCCATGGAACTGTTGAAGGTAAAAGGTCAGAGATCTTGGTCTGTTGGACTGTCAGTGGCTGACCT
GGTGGATACTATTATAAACAATAAAAGGAAAGTGCATTCTGTATCAACCTTAGCAAAGGGATATTATGGT
TTAGATAATGAAGTATTTTTAAGTTTGCCATGCATCCTGGGAACCGGTGGGGTATCCGAAGTCATCAAAA
CCAAAGCAGGAGAAGACACAGTGACTGGGACACTCCAGGCCAGTGCATCCTCCATCCATGCTCTCCAGCA
GCAGCTGGAACTGTGA

Translation (471 aa):
MEFDCEGVRRLLGKYKFRDLTVEELKNVSVSFPHFRYSVDTYVFKDTSQKDLLNFTGTIPVMYQGKTYNI
PIRFWILDSHPFAPPICFLKPTANMEISVGKHVDAKGRIYLPYLQNWSHPKSAIVGLIKEMIAKFQEELP
LYSIPSSNEAQQVDLLAYITKITEGVSDINSRGWTNHENKILNKITVVGSGDLGIACTLAISAKGIADKL
LLLDLSDGMSQGTMDLDIFNLPNVEISKDLSASAHSKVVIFTANSLGGSESYLHAVQSNVDMFRALVPAL
GHYSQHAVLLVASQPVEIMSYVTWKLSTFPATRVVGIGCNLDSQRLQYIITSVLKVQTSGKEVWVVGEQG
ENKVCSWSGRDGVLSPSSQAQLSSRAMELLKVKGQRSWSVGLSVADLVDTIINNKRKVHSVSTLAKGYYG
LDNEVFLSLPCILGTGGVSEVIKTKAGEDTVTGTLQASASSIHALQQQLEL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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