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Report for CCDS46683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46683.1 Public Homo sapiens 22 HORMAD2 24 110 108 CCDS HistoryNCBI Gene:150280Re-query CCDS DB by CCDS ID:46683.1Re-query CCDS DB by GeneID:150280See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46683.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336726.11 ENSP00000336984.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336726.11Link to Ensembl Protein Viewer:ENSP00000336984.6Re-query CCDS DB by Nucleotide ID:ENST00000336726Re-query CCDS DB by Protein ID:ENSP00000336984
Original member Current member EBI ENST00000403975.1 ENSP00000385055.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403975.1Link to Ensembl Protein Viewer:ENSP00000385055.1Re-query CCDS DB by Nucleotide ID:ENST00000403975Re-query CCDS DB by Protein ID:ENSP00000385055
Original member Current member NCBI NM_001329457.2 NP_001316386.1 Accepted alive Link to Nucleotide Sequence:NM_001329457.2Link to Protein Sequence:NP_001316386.1Re-query CCDS DB by Nucleotide ID:NM_001329457Re-query CCDS DB by Protein ID:NP_001316386Link to BLAST:NP_001316386.1
Original member Current member NCBI NM_152510.4 NP_689723.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152510.4Link to Protein Sequence:NP_689723.1Re-query CCDS DB by Nucleotide ID:NM_152510Re-query CCDS DB by Protein ID:NP_689723Link to BLAST:NP_689723.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316386.1 307 Q8N7B1 307 100% 0 0
NP_689723.1 307 Q8N7B1 307 100% 0 0

Chromosomal Locations for CCDS 46683.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30093953 30094003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30098852 30098993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30103437 30103500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30104401 30104437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30111796 30111816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30112496 30112522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30118980 30119047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30121632 30121789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30121964 30122214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30176063 30176167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGCCACTGCTCAGCTTTCTCACTGCATCACAATACACAAGGCTTCTAAGGAAACAGTTTTCCCATCCC
AAATCACTAATGAGCATGAGTCATTGAAAATGGTGAAGAAACTTTTTGCTACTTCCATCTCATGTATAAC
ATACCTAAGGGGCCTGTTTCCAGAGAGCTCTTATGGAGAACGCCATTTGGATGACCTCAGTTTAAAAATC
CTCCGAGAAGATAAAAAATGTCCCGGGTCACTGCATATTATCAGATGGATTCAAGGTTGTTTTGATGCTT
TGGAAAAGAGATACCTACGTATGGCAGTACTGACACTTTACACAGATCCCATGGGATCTGAGAAGGTGAC
TGAGATGTACCAGTTCAAATTCAAATACACGAAAGAAGGAGCCACTATGGATTTTGACAGTCATAGCAGC
AGTACAAGCTTTGAAAGTGGAACAAACAATGAAGATATTAAGAAAGCCAGTGTTCTACTGATCCGTAAAT
TGTATATACTGATGCAGGACCTTGAGCCACTTCCTAATAATGTTGTACTTACTATGAAACTCCACTACTA
TAATGCAGTGACCCCACATGATTACCAACCCCTCGGTTTTAAAGAAGGGGTAAATTCACACTTCCTGCTG
TTTGACAAGGAGCCTATCAACGTGCAAGTGGGATTTGTCTCCACTGGCTTTCATAGCATGAAAGTAAAAG
TCATGACAGAGGCTACAAAAGTGATTGATTTGGAGAACAATCTGTTTCGGGAGAACAGCACTACTGAGAT
CGCCCATCAGGGTCTAGACTGTGATGAGGAAGAAGAATGCAATGACCATATTCAAAGAATGAATTTTGTG
TGCAGTCAGCAAAGTTCTGAGTGCTCCAGGAAGAAGAGGAAGGTCAGTGAACCAGTGAAGGTCTTCATCC
CTAACAGAAAATGA

Translation (307 aa):
MATAQLSHCITIHKASKETVFPSQITNEHESLKMVKKLFATSISCITYLRGLFPESSYGERHLDDLSLKI
LREDKKCPGSLHIIRWIQGCFDALEKRYLRMAVLTLYTDPMGSEKVTEMYQFKFKYTKEGATMDFDSHSS
STSFESGTNNEDIKKASVLLIRKLYILMQDLEPLPNNVVLTMKLHYYNAVTPHDYQPLGFKEGVNSHFLL
FDKEPINVQVGFVSTGFHSMKVKVMTEATKVIDLENNLFRENSTTEIAHQGLDCDEEEECNDHIQRMNFV
CSQQSSECSRKKRKVSEPVKVFIPNRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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