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Report for CCDS87078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87078.1 Public Homo sapiens 3 GPX1 24 110 108 CCDS HistoryNCBI Gene:2876Re-query CCDS DB by CCDS ID:87078.1Re-query CCDS DB by GeneID:2876See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 87078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000496791.3 ENSP00000493593.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000496791.3Link to Ensembl Protein Viewer:ENSP00000493593.2Re-query CCDS DB by Nucleotide ID:ENST00000496791Re-query CCDS DB by Protein ID:ENSP00000493593
Original member Current member NCBI NM_001329502.2 NP_001316431.1 Accepted alive Link to Nucleotide Sequence:NM_001329502.2Link to Protein Sequence:NP_001316431.1Re-query CCDS DB by Nucleotide ID:NM_001329502Re-query CCDS DB by Protein ID:NP_001316431Link to BLAST:NP_001316431.1

Chromosomal Locations for CCDS 87078.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 49357826 49357888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49358027 49358278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 49

Nucleotide Sequence (315 nt):
ATGTGTGCTGCTCGGCTAGCGGCGGCGGCGGCGGCGGCCCAGTCGGTGTATGCCTTCTCGGCGCGCCCGC
TGGCCGGCGGGGAGCCTGTGAGCCTGGGCTCCCTGCGGGGCAAGGTACTACTTATCGAGAATGTGGCGTC
CCTCTGAGGCACCACGGTCCGGGACTACACCCAGATGAACGAGCTGCAGCGGCGCCTCGGACCCCGGGGC
CTGGTGGTGCTCGGCTTCCCGTGCAACCAGTTTGGGCATCAGCTGCTGAAATTCCTCTCCGCCCTTGGGA
TTGCGCATGGAGGGCAAAATCCCGGTGACTCATAG

Translation (104 aa):
MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRG
LVVLGFPCNQFGHQLLKFLSALGIAHGGQNPGDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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