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Report for CCDS40456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40456.1 Public Mus musculus 8 E2f4 23 108 98 CCDS HistoryNCBI Gene:104394Re-query CCDS DB by CCDS ID:40456.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40456.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015003.9 ENSMUSP00000015003.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015003.9Link to Ensembl Protein Viewer:ENSMUSP00000015003.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000015003Re-query CCDS DB by Protein ID:ENSMUSP00000015003
Original member Current member NCBI NM_148952.1 NP_683754.1 Accepted alive Link to Nucleotide Sequence:NM_148952.1Link to Protein Sequence:NP_683754.1Re-query CCDS DB by Nucleotide ID:NM_148952Re-query CCDS DB by Protein ID:NP_683754Link to BLAST:NP_683754.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683754.1 410 Q8R0K9 410 100% 0 0

Chromosomal Locations for CCDS 40456.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105297741 105297875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105298281 105298390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105298535 105298696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105298996 105299039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105300058 105300119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105300319 105300616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105301253 105301465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105304185 105304232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105304433 105304477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105304573 105304688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGGCGGAGGCCGGGCCACAGGCGCCGCCGCCCCCGGGGACTCCAAGCCGGCACGAGAAGAGTCTGGGAC
TTCTCACCACCAAGTTCGTGTCGCTCTTGCAGGAAGCCAAGGACGGCGTGCTTGACCTCAAGCTGGCAGC
CGACACTCTTGCTGTGCGCCAGAAACGGCGGATCTACGACATCACCAACGTGCTGGAAGGCATCGGTCTG
ATCGAGAAGAAATCCAAGAACAGCATCCAGTGGAAGGGCGTCGGGCCAGGTTGCAATACCCGGGAGATCG
CTGACAAGCTGATTGAGCTCAAGGCAGAGATCGAGGAGCTGCAGCAACGAGAGCAAGAACTGGACCAGCA
CAAGGTGTGGGTGCAGCAGAGCATCCGGAATGTCACTGAGGACGTCCAGAACAGCTGCTTGGCCTACGTG
ACTCATGAAGACATCTGCAGATGCTTTGCTGGAGATACCCTCCTTGCCATCCGGGCGCCATCGGGCACCA
GTCTAGAGGTGCCCATCCCAGAGGGTCTCAATGGCCAGAAGAAGTACCAGATTCACTTAAAGAGCATGAG
TGGGCCTATCGAGGTGCTGCTAGTGAACAAGGAGGCCTGGAGTTCACCACCTGTGGCTGTGCCTGTCCCT
CCCCCTGACGATCTACTCCAGAGTCCACCTGCTGTTTCTACACCTCCACCTCTGCCCAAGCCTGCCTTAG
CTCAACCCCAAGAATCCTCTCCTCCAAGCAGCCCCCAGCTAACTACCCCCACTCCTGTCCTTGGCAGCAC
TCAAGTCTCAGAGGTGGCATGCCAGACATCTGAGATTGCAGTGAGTGGTAGCCCTGGAACTGAGAACAAG
GACAGTGGTGAAGTCAGCTCACTCCCACTGGGCCTGACAGCACTGGACACTCGGCCTCTGCAGTCCTCTG
CACTGCTGGATAGTAGTAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGTTCATCTGGACCCAA
CCCTTCTACCTCCTTTGAGCCCATCAAAGCAGACCCCACAGGCGTTCTGGATCTCCCCAAAGAGCTGTCA
GAAATCTTCGACCCCACGAGAGAGTGCATGAGCTCCGAGCTGCTGGAAGAACTGATGTCTTCAGAAGTGT
TTGCCCCCCTCCTCCGACTTTCTCCACCTCCCGGAGACCACGATTACATCTACAACCTGGACGAGAGTGA
AGGTGTCTGTGATCTCTTTGATGTTCCTGTTCTCAAACTCTGA

Translation (410 aa):
MAEAGPQAPPPPGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGL
IEKKSKNSIQWKGVGPGCNTREIADKLIELKAEIEELQQREQELDQHKVWVQQSIRNVTEDVQNSCLAYV
THEDICRCFAGDTLLAIRAPSGTSLEVPIPEGLNGQKKYQIHLKSMSGPIEVLLVNKEAWSSPPVAVPVP
PPDDLLQSPPAVSTPPPLPKPALAQPQESSPPSSPQLTTPTPVLGSTQVSEVACQTSEIAVSGSPGTENK
DSGEVSSLPLGLTALDTRPLQSSALLDSSSSSSSSSSSSSSSSSGPNPSTSFEPIKADPTGVLDLPKELS
EIFDPTRECMSSELLEELMSSEVFAPLLRLSPPPGDHDYIYNLDESEGVCDLFDVPVLKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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