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Report for CCDS46116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46116.1 Public Homo sapiens 19 FBXO46 24 110 108 CCDS HistoryNCBI Gene:23403Re-query CCDS DB by CCDS ID:46116.1Re-query CCDS DB by GeneID:23403See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46116.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317683.4 ENSP00000410007.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317683.4Link to Ensembl Protein Viewer:ENSP00000410007.1Re-query CCDS DB by Nucleotide ID:ENST00000317683Re-query CCDS DB by Protein ID:ENSP00000410007
Original member Current member NCBI NM_001080469.2 NP_001073938.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080469.2Link to Protein Sequence:NP_001073938.1Re-query CCDS DB by Nucleotide ID:NM_001080469Re-query CCDS DB by Protein ID:NP_001073938Link to BLAST:NP_001073938.1
Original member Current member NCBI NM_001329632.1 NP_001316561.1 Accepted alive Link to Nucleotide Sequence:NM_001329632.1Link to Protein Sequence:NP_001316561.1Re-query CCDS DB by Nucleotide ID:NM_001329632Re-query CCDS DB by Protein ID:NP_001316561Link to BLAST:NP_001316561.1
Original member Current member NCBI NM_001329633.2 NP_001316562.1 Accepted alive Link to Nucleotide Sequence:NM_001329633.2Link to Protein Sequence:NP_001316562.1Re-query CCDS DB by Nucleotide ID:NM_001329633Re-query CCDS DB by Protein ID:NP_001316562Link to BLAST:NP_001316562.1
Original member Current member NCBI NM_001329634.1 NP_001316563.1 Accepted alive Link to Nucleotide Sequence:NM_001329634.1Link to Protein Sequence:NP_001316563.1Re-query CCDS DB by Nucleotide ID:NM_001329634Re-query CCDS DB by Protein ID:NP_001316563Link to BLAST:NP_001316563.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073938.1 603 Q6PJ61 603 100% 0 0
NP_001316561.1 603 Q6PJ61 603 100% 0 0
NP_001316562.1 603 Q6PJ61 603 100% 0 0
NP_001316563.1 603 Q6PJ61 603 100% 0 0

Chromosomal Locations for CCDS 46116.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 45711684 45713495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1812 nt):
ATGGACCGTGGGAGCCTCCTGCCCTTCCAGCTATGGTGCCCCCGGCCCTTTGGCACCTACTCACAGAACC
AGCCACGCCCGCCTTCTGCGGCCCTCAAGCCATCAGCCTGCCCTGAGCCTGGTGGCGGGGCCGAGCCAGA
CCATGGGCCTGCCCACTCAGAGAACACACCACCCGCCTTGGCCACTGAGGTCCCTGCCTCCCAGCCGGCT
CCGCTCCTCTCAGCAGCAGCTGCTGGTGATGAGGGTCGAGTCCTCCTGGACACGTGGTATGTCATCAAGC
CCGGGAATACAAAGGAGAAGGTGGCCTTCTTTGTGGCCCACCAGTGTGGTGGGGGCAGCCGGGCCAGCTC
CATGAAGGTCAAGGGGCACTGGGGCAGCGATAGCTCCAAGGCCAAGCGGCGGAGGCGCTGTCTTGACCCC
ACCAAGGCTCCTCCTGACCCAGGGGGCCGGGAGGGCCCCCCTGCTGCTGAGGAGGGCCCCGCCTCAGCCG
GTGAGGACGTGGACCTGCTCTCTGTGGCCGAGATGGTGGCCCTGGTGGAACAGCGGGCAGCCCTGGCCCT
GCAGAGCTACCCACGACCGACCACCCCAGCGCCTGTAGTCTTTGTGTCCGCCGAGCAAGGTGGACCGGCC
AAGGGGGTGGGATCTGAACGGCGGTCCGGTGGTGGGGACTGCAGCCGTGTAGCCGAGGCCGTGGCCCACT
TTGAAGCGCAGAGGGACAGCCCTCCCACCAAGGGCCTCCGCAAGGAAGAGCGGCCCGGGCCAGGCCCTGG
GGAGGTGCGCATCGCCTTCCGCATCTCCAACGGCCGGGAGCCCCGTGCACCAGACAGCGGCCTGCCCAGT
GGGGGCGGGGGCAGGCCTGGTTGTGCCTACCCTGGCAGCCCAGGTCCTGGGGCCCGAGCCAAGGACAAGA
TCACATGTGACTTATACCAGCTCATCAGCCCCTCGCGGGATGCCCTCCCCAGCAACGTGGAGTTCCTGCT
GGCCAGGGCGGATGAGGCCAGTGAGGGTGACAGCCCGGCACCCGCCAGGCCTGAGGACACTCCCCCGGCG
CCCCCTCCGCCCCCTGCCCGGGACTGCGGAGCGTCAGGCTTCCACGTGGACGTGGTGGTGACGGGCGTGG
TAGATGAGTGCATCTTCTTTGGCAAGGACGGCACCAAGAACGTGAAGGAGGAGACTGTGTGCCTGACGGT
CAGCCCGGAGGAACCGCCGCCTCCGGGCCAGCTCTTCTTTCTCCAGAACCGCGGGCCGGACGGGCCCCCG
GAGCCACCCCCGGCCGACTCCCCGGCCACTGCGCCCGGCCCAGACGATGCCGAGGGCACGGCGGACACCT
CCCTGTGCCGCTTGTACCGGCACGTGTCGCACGACTTCCTAGAGATCCGCTTCAAGATTCAGCGGCTGCT
GGAGCCGCGACAGTACATGCTGCTGCTGCCCGAGCACGTGCTGGTCAAGATCTTCAGCTTCCTGCCCACG
CGCGCGCTGGCCGCCCTCAAGTGCACCTGCCACCACTTCAAGGGCATCATCGAGGCGTTTGGCGTGCGGG
CCACAGACTCGCGCTGGAGCCGAGACCCGCTCTACCGCGATGATCCGTGCAAACAGTGCCGCAAGAGATA
CGAGAAGGGCGACGTGTCGCTCTGCCGCTGGCACCCCAAGCCCTACCACCATGACCTGCCTTACGGACGT
TCCTACTGGATGTGCTGCCGTCGAGCCGACCGCGAGACTCCCGGCTGCCGCCTGGGCCTCCACGATAACA
ACTGGGTGCTGCCCTGCAATGGGCCAGGCGGGGGCCGGGCCGGCCGGGAGGAGGGGAGGTGA

Translation (603 aa):
MDRGSLLPFQLWCPRPFGTYSQNQPRPPSAALKPSACPEPGGGAEPDHGPAHSENTPPALATEVPASQPA
PLLSAAAAGDEGRVLLDTWYVIKPGNTKEKVAFFVAHQCGGGSRASSMKVKGHWGSDSSKAKRRRRCLDP
TKAPPDPGGREGPPAAEEGPASAGEDVDLLSVAEMVALVEQRAALALQSYPRPTTPAPVVFVSAEQGGPA
KGVGSERRSGGGDCSRVAEAVAHFEAQRDSPPTKGLRKEERPGPGPGEVRIAFRISNGREPRAPDSGLPS
GGGGRPGCAYPGSPGPGARAKDKITCDLYQLISPSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPA
PPPPPARDCGASGFHVDVVVTGVVDECIFFGKDGTKNVKEETVCLTVSPEEPPPPGQLFFLQNRGPDGPP
EPPPADSPATAPGPDDAEGTADTSLCRLYRHVSHDFLEIRFKIQRLLEPRQYMLLLPEHVLVKIFSFLPT
RALAALKCTCHHFKGIIEAFGVRATDSRWSRDPLYRDDPCKQCRKRYEKGDVSLCRWHPKPYHHDLPYGR
SYWMCCRRADRETPGCRLGLHDNNWVLPCNGPGGGRAGREEGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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