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Report for CCDS26165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26165.1 Public Mus musculus 12 Slc25a47 23 108 98 CCDS HistoryNCBI Gene:104910Re-query CCDS DB by CCDS ID:26165.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057026.9 ENSMUSP00000050329.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057026.9Link to Ensembl Protein Viewer:ENSMUSP00000050329.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000057026Re-query CCDS DB by Protein ID:ENSMUSP00000050329
Original member Current member NCBI NM_001012310.2 NP_001012310.2 Accepted alive Link to Nucleotide Sequence:NM_001012310.2Link to Protein Sequence:NP_001012310.2Re-query CCDS DB by Nucleotide ID:NM_001012310Re-query CCDS DB by Protein ID:NP_001012310Link to BLAST:NP_001012310.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012310.2 310 Q6IS41 310 100% 0 0

Chromosomal Locations for CCDS 26165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 108851180 108851207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108853349 108853392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108853703 108853774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108854216 108854398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108855294 108855618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108855939 108856219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGATTTTGTTGCTGGGGCCATTGGAGGAGTCTGCGGTGTTGCTGTGGGCTACCCTCTGGATACAGTGA
AGGTCAGAATCCAGACGGAGGCCAAATACGCAGGCATCTGGCACTGCATCCGGGACACGTATCGTCAAGA
GCGGGTGTGGGGCTTCTACAGGGGCCTCTCACTGCCCGTGTGCACAGTGTCCCTGGTGTCGTCTGTATCT
TTTGGTACCTACCACCACTGCCTGGCTCACATCTGCCGCTTCCGGTACGGCAGCACGGACGCCAAGCCCA
CCAAGGCTGATATCACACTCTCAGGATGTGCCTCTGGTCTTGTCCGGGTGTTCCTGACGTCACCCACTGA
GGTGGCCAAAGTCCGCCTGCAGACACAGACCCAAGCTCAGACACAGCAGCGGCGGTCCTCGGCCTCCTGG
ACATCTGGGGCTCCCGCTTTGTGTCCCACACCCACTGCTTGCTTGGAGCCCAGGCCTAAGTACAGTGGGC
CACTGCACTGTTTAGTCACAGTGGCTCGAGAGGAGGGGCTTCGGGGACTCTACAAGGGCAGCTCGGCTCT
GCTCCTTCGTGAGGGTCACTCCTTTGCCACCTACTTTCTCTCCTATGCTATGCTCTGCGAGTGGCTCACC
CCTGCTGGCCATAGTCAGCCAGATGTCTTAGGTGTGTTGGTGGCTGGAGGCTGCGCTGGGGTCCTGGCCT
GGGCCGTGGCCACCCCCATGGATGTGATCAAGTCACGCCTGCAGGCGGATGGGCAGGGCCAGCATCGCTA
CCGGGGCCTCCTGCACTGTGTGGTGACCAGTGTACGGGAGGAGGGTCCCAGGGTGCTCTTCAAGGGACTG
GCACTCAACTGCTGTCGTGCCTTTCCTGTTAACATGGTGGTCTTTGTGGCGTATGAGGCTGTGCTGAGGC
TCACGCAGAGCCTGCTCACATAG

Translation (310 aa):
MDFVAGAIGGVCGVAVGYPLDTVKVRIQTEAKYAGIWHCIRDTYRQERVWGFYRGLSLPVCTVSLVSSVS
FGTYHHCLAHICRFRYGSTDAKPTKADITLSGCASGLVRVFLTSPTEVAKVRLQTQTQAQTQQRRSSASW
TSGAPALCPTPTACLEPRPKYSGPLHCLVTVAREEGLRGLYKGSSALLLREGHSFATYFLSYAMLCEWLT
PAGHSQPDVLGVLVAGGCAGVLAWAVATPMDVIKSRLQADGQGQHRYRGLLHCVVTSVREEGPRVLFKGL
ALNCCRAFPVNMVVFVAYEAVLRLTQSLLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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