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Report for CCDS25820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25820.1 Public Mus musculus 12 Lratd1 23 108 98 CCDS HistoryNCBI Gene:105005Re-query CCDS DB by CCDS ID:25820.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25820.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020926.7 ENSMUSP00000020926.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020926.7Link to Ensembl Protein Viewer:ENSMUSP00000020926.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020926Re-query CCDS DB by Protein ID:ENSMUSP00000020926
Original member Current member NCBI NM_029007.2 NP_083283.2 Accepted alive Link to Nucleotide Sequence:NM_029007.2Link to Protein Sequence:NP_083283.2Re-query CCDS DB by Nucleotide ID:NM_029007Re-query CCDS DB by Protein ID:NP_083283Link to BLAST:NP_083283.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083283.2 292 Q9D650 292 99.6575% 0 1

Chromosomal Locations for CCDS 25820.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 14149846 14150724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGGCAACCAACTGGACCGCATCACCCACCTCAACTACAGCGAGTTGCCCACTGGGGACCCATCTGGGA
TTGAGAAGGACGAGCTGCGAGTCGGGGTTGCCTACTTCTTCTCGGATGAGGAGGAGGACCTGGACGAACG
CGGGCAGCCGGACAAGTTTGGTGTGAAGGGCCCCCCAGGTTGCAGCCCTTGCCCAGAGAGCCCCAGCCGC
CACCACCACCACCTGCTGCACCAGCTCGTCCTCAACGAGACTCAGTTCTCCGCCTTCCGGGGCCAGGAAT
GCATCTTTTCCAAAGTGACCGGCGGCCCTCAGGGCGCCGACTTGAGTGTCTACGCGGTCACTGCGCTGCC
GGCGATCTGCGAGCCAGGCGACCTGCTAGAGCTCTTGTGGCTACAGCCGGCGACCGAGCAGCCCGCGCCA
GCCCCTCACTGGGCCGTCTACGTGGGCGGCGGGCAGATCATCCACCTGCACCAAGGCGAGATCCGCCAGG
ACAGCCTGTACCAGGCGGGCGCGGCCAACGTGGGCCGGGTGGTGAATAGCTGGTACCGCTACCGCCCGCT
GGTGGCCGAGCTAGTGGTGCAGAACGCCTGTGGCCACCTGGGCCTCAAGAGCGAGGAGATCTGCTGGACG
AACTCCGAGAGCTTCGCTGCCTGGTGCCGCTTTGGAAAGCGCGAGTTCAAGGCTGGCGGGGAGGTCCCCG
CAGGAACGCAGCCGCCGCAACAGCAGTATTATCTCAAAGTGCATCTGGAGGAGAACAAAGTCCACACGGC
CCGGTTCCACAGCCTGGAGGACCTCATCCGCGAGAAGCGTCGCATAGACGCCAGTGGCCGCCTGCGAGTG
CTGCAGGAGCTTGAGGACTTTGTGGACGACAAGGAGTAG

Translation (292 aa):
MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDLDERGQPDKFGVKGPPGCSPCPESPSR
HHHHLLHQLVLNETQFSAFRGQECIFSKVTGGPQGADLSVYAVTALPAICEPGDLLELLWLQPATEQPAP
APHWAVYVGGGQIIHLHQGEIRQDSLYQAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWT
NSESFAAWCRFGKREFKAGGEVPAGTQPPQQQYYLKVHLEENKVHTARFHSLEDLIREKRRIDASGRLRV
LQELEDFVDDKE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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