NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS81873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81873.1 Public Homo sapiens 15 PATL2 24 110 108 CCDS HistoryNCBI Gene:197135Re-query CCDS DB by CCDS ID:81873.1Re-query CCDS DB by GeneID:197135See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81873.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000560780.1 ENSP00000453695.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000560780.1Link to Ensembl Protein Viewer:ENSP00000453695.1Re-query CCDS DB by Nucleotide ID:ENST00000560780Re-query CCDS DB by Protein ID:ENSP00000453695
Original member Current member NCBI NM_001330283.2 NP_001317212.1 Accepted alive Link to Nucleotide Sequence:NM_001330283.2Link to Protein Sequence:NP_001317212.1Re-query CCDS DB by Nucleotide ID:NM_001330283Re-query CCDS DB by Protein ID:NP_001317212Link to BLAST:NP_001317212.1

Chromosomal Locations for CCDS 81873.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 44665953 44665971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44666392 44666541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44667106 44667203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44668342 44668482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44668980 44669139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44669280 44669413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44669510 44669563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44669777 44669874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44669967 44670087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44672015 44672104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGACCAGAAAAGAGAAGGACTGGGTGATAAAAGTGCAGATGGTGCAGCTGCAGAGTGCAAAACCCCGCC
TGGATGACTACTATTACCAGGAATATTACCAGAAGCTAGAGAAGAAGCAGGCAGACGAAGAGCTACTTGG
ACGAAGAAACCGGGTTGAGTCCCTCAAGCTGGTAACGCCTTACATTCCGAAGGCAGAGGCTTATGAGTCC
GTGGTCCGAATCGAGGGTTCCCTGGGCCAGGTAGCTGTGTCGACATGCTTCAGCCCTCGCCGAGCTATTG
ATGCGGTACCCCATGGAACTCAAGAGCAGGATATAGAAGCTGCAAGCAGTCAGAGGCTTCGGGTATTATA
CCGGATTGAGAAGATGTTCCTTCAGTTACTAGAAATAGAGGAAGGCTGGAAGTATAGGCCTCCACCGCCC
TGCTTTTCTGAGCAGCAAAGCAACCAGGTTGAGAAGCTCTTCCAGACCTTAAAGACCCAGGAGCAGAACA
ACCTGGAAGAGGCAGCAGATGGCTTCCTGCAGGTGCTCTCTGTGAGGAAGGGGAAGGCCCTGGTGGCCCG
GCTGCTCCCCTTCCTGCCCCAGGATCAGGCTGTTACCATTCTTTTGGCTATCACCCACCATCTGCCCCTC
CTGGTCCGGAGGGATGTGGCTGATCAGGCCCTACAAATGTTATTCAAACCTCTGGGCAAATGTATTAGTC
ACTTGACCCTCCACGAACTCCTCCAAGGACTTCAGGGATTAACGCTGTTGCCACCTGGCTCCTCAGAGCG
GCCAGTCACCGTGGTGCTTCAGAATCAGTTTGGAATATCTTTGCTCTATGCCCTGCTGAGCCATGGGGAG
CAACTGGTATCGCTGCATTCTTCCCTAGAGGAACCCAACAGTGACCATACAGCTTGGACAGACATGGTGG
TTCTGATTGCCTGGGAGATAGCCCAAATGCCTACAGCCTCTCTGGCAGAACCCCTAGCTTTCCCCAGCAA
CCTACTTCCCCTGTTCTGTCACCACGTGGACAAACAATTGGTTCAGCAGCTGGAGGCCAGGATGGAGTTT
GCCTGGATTTACTGA

Translation (354 aa):
MTRKEKDWVIKVQMVQLQSAKPRLDDYYYQEYYQKLEKKQADEELLGRRNRVESLKLVTPYIPKAEAYES
VVRIEGSLGQVAVSTCFSPRRAIDAVPHGTQEQDIEAASSQRLRVLYRIEKMFLQLLEIEEGWKYRPPPP
CFSEQQSNQVEKLFQTLKTQEQNNLEEAADGFLQVLSVRKGKALVARLLPFLPQDQAVTILLAITHHLPL
LVRRDVADQALQMLFKPLGKCISHLTLHELLQGLQGLTLLPPGSSERPVTVVLQNQFGISLLYALLSHGE
QLVSLHSSLEEPNSDHTAWTDMVVLIAWEIAQMPTASLAEPLAFPSNLLPLFCHHVDKQLVQQLEARMEF
AWIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH