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Report for CCDS13064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13064.1 Public Homo sapiens 20 CENPB 24 110 108 CCDS HistoryNCBI Gene:1059Re-query CCDS DB by CCDS ID:13064.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13064.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379751.5 ENSP00000369075.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379751.5Link to Ensembl Protein Viewer:ENSP00000369075.4Re-query CCDS DB by Nucleotide ID:ENST00000379751Re-query CCDS DB by Protein ID:ENSP00000369075
Original member Current member NCBI NM_001810.6 NP_001801.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001810.6Link to Protein Sequence:NP_001801.1Re-query CCDS DB by Nucleotide ID:NM_001810Re-query CCDS DB by Protein ID:NP_001801Link to BLAST:NP_001801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001801.1 599 P07199 599 100% 0 0

Chromosomal Locations for CCDS 13064.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3784684 3786483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGGGCCCCAAGAGGCGACAGCTGACGTTCCGGGAGAAGTCACGGATCATCCAGGAGGTGGAGGAGAATC
CGGACCTGCGCAAGGGCGAGATCGCGCGGCGCTTCAACATCCCGCCGTCCACGCTGAGCACGATCCTGAA
GAACAAGCGCGCCATCCTGGCGTCGGAGCGCAAGTACGGGGTGGCCTCCACCTGCCGCAAGACCAACAAG
CTGTCTCCCTACGACAAGCTCGAGGGCTTGCTCATCGCCTGGTTCCAGCAGATCCGCGCCGCCGGCCTGC
CGGTCAAGGGCATCATCCTCAAGGAGAAGGCGCTGCGCATAGCCGAGGAGCTGGGCATGGACGACTTCAC
CGCCTCCAACGGCTGGCTGGACCGCTTCCGCCGGCGCCACGGCGTGGTGTCCTGCAGCGGCGTGGCCCGC
GCCCGCGCGCGAAACGCTGCCCCCCGCACCCCGGCGGCGCCTGCCAGTCCGGCCGCGGTGCCCTCGGAGG
GCAGTGGCGGGAGCACTACTGGTTGGCGCGCTCGGGAGGAGCAGCCGCCGTCGGTGGCCGAGGGCTACGC
CTCGCAGGACGTGTTCAGCGCCACCGAGACCAGTCTATGGTACGACTTCCTGCCCGACCAGGCCGCGGGG
CTGTGCGGAGGCGACGGACGGCCGCGTCAAGCCACCCAGCGCCTGAGCGTCCTGCTATGCGCCAATGCCG
ACGGCAGCGAGAAGCTGCCCCCGCTGGTGGCCGGCAAGTCGGCCAAGCCCCGCGCAGGCCAAGCCGGCCT
GCCCTGCGACTACACCGCCAACTCCAAGGGTGGTGTCACCACCCAGGCCCTGGCCAAGTACTTGAAGGCC
TTGGACACCCGAATGGCTGCAGAGTCTCGCCGGGTCCTGCTGTTGGCCGGCCGCTTGGCTGCCCAGTCCT
TGGACACCTCGGGCCTGCGGCATGTGCAGCTGGCCTTCTTCCCTCCCGGCACCGTGCATCCGCTGGAGAG
GGGAGTGGTCCAGCAGGTGAAGGGCCACTACCGCCAGGCCATGCTGCTCAAGGCCATGGCCGCGCTAGAG
GGCCAGGATCCCTCAGGCCTGCAGCTGGGTCTCACGGAGGCCCTGCACTTTGTGGCTGCCGCCTGGCAGG
CAGTGGAGCCTTCGGACATAGCCGCCTGCTTTCGTGAGGCTGGCTTTGGGGGTGGCCCTAATGCCACCAT
CACCACTTCCCTCAAGAGTGAGGGAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAAGAGGGT
GAAGGAGAGGAAGAGGAGGAGGAAGGGGAGGAGGAGGAGGAGGAAGGGGGGGAAGGAGAGGAATTGGGGG
AGGAAGAGGAGGTGGAGGAGGAGGGTGATGTTGATAGTGATGAAGAAGAGGAGGAAGATGAGGAGAGCTC
CTCGGAGGGCTTGGAGGCTGAGGACTGGGCCCAGGGAGTAGTGGAGGCCGGTGGCAGCTTCGGGGCTTAT
GGTGCCCAGGAGGAAGCCCAGTGCCCTACTCTGCATTTCCTGGAAGGTGGGGAGGACTCTGATTCAGACA
GTGAGGAAGAGGACGATGAGGAAGAGGATGATGAAGATGAAGACGACGATGATGATGAGGAGGATGGTGA
TGAGGTGCCTGTACCCAGCTTTGGGGAGGCCATGGCTTACTTTGCCATGGTCAAGAGGTACCTGACCTCC
TTCCCCATTGATGACCGCGTGCAGAGCCACATCCTCCACTTGGAACACGATCTGGTTCATGTGACCAGGA
AGAACCACGCCAGGCAGGCGGGAGTTCGAGGTCTTGGACATCAAAGCTGA

Translation (599 aa):
MGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCRKTNK
LSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRHGVVSCSGVAR
ARARNAAPRTPAAPASPAAVPSEGSGGSTTGWRAREEQPPSVAEGYASQDVFSATETSLWYDFLPDQAAG
LCGGDGRPRQATQRLSVLLCANADGSEKLPPLVAGKSAKPRAGQAGLPCDYTANSKGGVTTQALAKYLKA
LDTRMAAESRRVLLLAGRLAAQSLDTSGLRHVQLAFFPPGTVHPLERGVVQQVKGHYRQAMLLKAMAALE
GQDPSGLQLGLTEALHFVAAAWQAVEPSDIAACFREAGFGGGPNATITTSLKSEGEEEEEEEEEEEEEEG
EGEEEEEEGEEEEEEGGEGEELGEEEEVEEEGDVDSDEEEEEDEESSSEGLEAEDWAQGVVEAGGSFGAY
GAQEEAQCPTLHFLEGGEDSDSDSEEEDDEEEDDEDEDDDDDEEDGDEVPVPSFGEAMAYFAMVKRYLTS
FPIDDRVQSHILHLEHDLVHVTRKNHARQAGVRGLGHQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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