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Report for CCDS81942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81942.1 Public Homo sapiens 16 CLUAP1 24 110 108 CCDS HistoryNCBI Gene:23059Re-query CCDS DB by CCDS ID:81942.1Re-query CCDS DB by GeneID:23059See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81942.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341633.9 ENSP00000344392.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341633.9Link to Ensembl Protein Viewer:ENSP00000344392.5Re-query CCDS DB by Nucleotide ID:ENST00000341633Re-query CCDS DB by Protein ID:ENSP00000344392
Original member Current member NCBI NM_001330454.2 NP_001317383.1 Accepted alive Link to Nucleotide Sequence:NM_001330454.2Link to Protein Sequence:NP_001317383.1Re-query CCDS DB by Nucleotide ID:NM_001330454Re-query CCDS DB by Protein ID:NP_001317383Link to BLAST:NP_001317383.1

Chromosomal Locations for CCDS 81942.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3501068 3501089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3504720 3504831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3506331 3506415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3508289 3508468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3512383 3512478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3515508 3515591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3519903 3520036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3523158 3523299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3526412 3526484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3530568 3530675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3532786 3532841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3533099 3533155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3536122 3536271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGTCTTTCCGCGACCTCCGCAATTTCACAGAGATGATGAGAGCCCTGGGATACCCTCGACATATTTCTA
TGGAAAATTTCCGTACACCCAATTTTGGACTTGTATCTGAAGTGCTTCTCTGGCTTGTGAAAAGATATGA
GCCCCAGACTGACATCCCGCCTGACGTGGATACTGAACAGGACCGAGTTTTCTTCATTAAGGCAATTGCC
CAGTTCATGGCCACCAAGGCACATATAAAACTCAACACTAAGAAGCTTTATCAAGCAGATGGGTATGCGG
TAAAAGAGCTGCTGAAGATCACATCTGTCCTTTATAATGCTATGAAGACCAAGGGGATGGAGGGCTCTGA
AATAGTAGAGGAAGATGTCAACAAGTTCAAGTTTGATCTTGGCTCAAAGATTGCAGATTTGAAGGCAGCC
AGGCAGCTTGCGTCTGAAATCACCTCCAAAGGAGCATCTCTGTATGACTTGCTCGGCATGGAAGTAGAGT
TGAGGGAAATGAGAACAGAAGCCATTGCCAGACCTCTGGAAATAAACGAGACTGAAAAAGTGATGAGAAT
TGCAATAAAAGAGATTTTGACACAGGTTCAGAAGACTAAAGACCTGCTCAATAATGTGGCCTCTGATGAA
GCTAATTTAGAAGCCAAAATCGAAAAGAGAAAATTAGAACTGGAAAGAAATCGGAAGCGACTAGAGACTC
TGCAGAGTGTCAGGCCATGTTTTATGGATGAGTATGAGAAGACTGAGGAAGAATTACAAAAGCAGTATGA
CACTTATCTGGAGAAATTTCAAAATCTGACTTATCTGGAACAACAGCTTGAAGACCATCATAGGATGGAG
CAAGAAAGGTTTGAGGAAGCTAAAAACACTCTCTGCCTGATACAGAACAAGCTCAAGGAGGAAGAGAAGC
GCCTGCTCAAGAGTGGAAGTAACGATGACTCGGACATAGACATCCAGGAGGACGATGAATCCGACAGTGA
GTTGGAAGAAAGGCGGCTGCCCAAGCCACAGACAGCCATGGAGATGCTCATGCAAGGAAGACCTGGCAAA
CGCATTGTGGGCACGATGCAAGGTGGAGACTCCGATGACAATATGGAAGCAGCACCAGCTCTCTTAGGTA
AATGCAAGACTTCCAGCTCCAAGAAGCAGGAGGACTCGGAGGAGAGTGAAATTGACATGGAAGATGATGA
TGACGAGGATGACGATTTGGAAGACGAGAGCATTTCTCTCTCACCAACCAAGCCCAATCGAAGGGTCCGG
AAATCTGAACCCCTGGATGAGAGTGACAATGACTTCTGA

Translation (432 aa):
MSFRDLRNFTEMMRALGYPRHISMENFRTPNFGLVSEVLLWLVKRYEPQTDIPPDVDTEQDRVFFIKAIA
QFMATKAHIKLNTKKLYQADGYAVKELLKITSVLYNAMKTKGMEGSEIVEEDVNKFKFDLGSKIADLKAA
RQLASEITSKGASLYDLLGMEVELREMRTEAIARPLEINETEKVMRIAIKEILTQVQKTKDLLNNVASDE
ANLEAKIEKRKLELERNRKRLETLQSVRPCFMDEYEKTEEELQKQYDTYLEKFQNLTYLEQQLEDHHRME
QERFEEAKNTLCLIQNKLKEEEKRLLKSGSNDDSDIDIQEDDESDSELEERRLPKPQTAMEMLMQGRPGK
RIVGTMQGGDSDDNMEAAPALLGKCKTSSSKKQEDSEESEIDMEDDDDEDDDLEDESISLSPTKPNRRVR
KSEPLDESDNDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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