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Report for CCDS38710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38710.1 Public Mus musculus 4 Topors 23 108 98 CCDS HistoryNCBI Gene:106021Re-query CCDS DB by CCDS ID:38710.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38710.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042575.6 ENSMUSP00000046843.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042575.6Link to Ensembl Protein Viewer:ENSMUSP00000046843.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042575Re-query CCDS DB by Protein ID:ENSMUSP00000046843
Original member Current member NCBI NM_134097.3 NP_598858.2 Accepted alive Link to Nucleotide Sequence:NM_134097.3Link to Protein Sequence:NP_598858.2Re-query CCDS DB by Nucleotide ID:NM_134097Re-query CCDS DB by Protein ID:NP_598858Link to BLAST:NP_598858.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598858.2 1033 Q80Z37 1033 100% 0 0

Chromosomal Locations for CCDS 38710.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40260181 40263081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40268304 40268501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40269674 40269676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3102 nt):
ATGGGGTCGCAGCCGCCGCCACCGGGGTCTCCGCTGTCTCGCGAGGAGGGTGAAGCGCCCCCTCTGGTGC
CTGCCGAGGAGGGGAGGCGCCGAAGCCGCCGGGTACGCCTTCGCGGATCCTGCCGCCACCGGCCGAGCTT
ACTGAGCCGGCGGGAGCTGGCTTCCAACGGCCCAGCGGTTCCTGCCACCGCGTCCTCGGAGATAATGGCC
TCAGCTGCTAAGGAATTTAAAATGGACAACTTTTCACCTAAAGCTGGCACTAGCAAATTGCAGCAGACAG
TACCAGCTGATGCGTCTCCTGATTCTAAGTGTCCTATATGCTTGGATAGATTTGATAATGTGTCTTACTT
AGATCGTTGCCTACATAAGTTCTGTTTTCGCTGTGTACAAGAGTGGTCCAAAAACAAAGCCGAATGCCCA
CTGTGTAAACAGCCCTTTGATTCTATTTTCCATTCAGTGAGGGCTGAAGATGACTTCAAGGAGTATGTCC
TGAGGCCTTCCTATAATGGTTCCTTTACTAACCCTGAGGTTCGAAGGTTTCGCTACCGGACAACTATGAC
GAGAGAACGGAGCGCCTCTCTTTATTCACCCAGTAGTACTGTAAGTAGGAGAACAACCACGCCACCAGAT
AGTGGAGTGCTGTTTGAAGGGTTAGGCATTTCGACAAGACCTAGAGATGTTGACATTCCTCAATTTATGA
GACAAATGGCATTAAGGGGGCCAACTACTACAGATGAGAGATCTTTGCGGAAAATTCAAGAACAAGATAT
TATTAATTTCAGGCGAACTCTTTATCGTGCTGGTGTTCGAGTTAGAAGTATTGAAGATGGTGGCCGCTAC
AGGGATATTTCAGCTGAGTTCTTCCGTAGAAATCCAGCTTGCCTTCACAGATTAGTTCCTTGGTTAAAGC
GTGAACTTACTGTGCTTTTTGGAGCCCATGGTTCGCTAGTCAATATCGTCCAGCACATCATCATGAGTAA
TGTTACTCGCTATGATTTGGAGAGTCAGGCATTTGTGTCTGACTTAAGACCATTTTTGCTTAATCGAACT
GAGCATTTTATACATGAATTTATCAGTTTTGCTAGATCTCCCTTCAATATGGCAGCTTTTGACCAGCATG
CTAATTATGATTGCCCTCCTTCATCTGAAGAAGGCAGCCGTTCAGATTCTTCAGTCATTACAATATCACC
AGATGAGGCTGAAACTCAAGAGCTAGATATGAATGCATCTACTGTTAGGCAGGCACCGTGGGATGATGAA
ACTCCTGGACCATCTTATTCAAGTTCAGAGCAAGTGCATGTTGGCGTGTCTTCCCTTTTAAATTCTTCAG
ACAGTTCAGATGAAGAGCTTGTCTCTGGAGGAACCACATCTCAGATACAAGGAGTACAGACCAATGACGA
TGTCAATAATGACAGTGATTCATCGTCAGATAATTGTGTCATTGTTGGGTTTGTTAAGCCATTGGCTGAA
AGGACCCCGGAACTTGTTGAACTGTCTTCTGATTCTGAGGAGTTGGGCCCTTATGAGAAAGTGGAGACAG
TGAAGACTCAGGAGCAAGAGCAGTCGTACAGTTCAGGTGACAGTGATGTTAGCCGGGCGTCATCTCCACG
CTCTGTCCTTGGAAAAGATGAACAAATGAGTAAAAGCCATTGTGATTCTGACACAAGAATAAGCTCAAAG
AAAGAAGAGAAACGATCTACATCATTGCCAGCTCCCAGGGACAGCTCATCTACAAGAGGTGACAGGGTAT
GCTCCCCATATAACCATCGACACAGGAAGGGAGGAAGGTCGAGGAGTTCAGATTCCCGGTCCCAGAGTAG
AAGTGGCCATGACCCGAGGAATCACAGGAAGCACGGGAAGAAAAGACTGAGGAACAAGAGGTCCAGAAGC
AGGGAGAGTAGTAGCAGGCCGAGAGCAAGAAAGGACAAAAAGAGATCCAGAACTAGAGATAGCAGCTGGT
CCCGGAGGAGCCAGACACTTTCTCTAAGTAGTGGAAGCACCAGTAGATCGAGGTCTCGTAGCAGTGATCA
TGGCAAAAGAAGATCACGAAGCAGAAATCGAGATCGCTATTATTTAAGAAATAATTATGGAAGCAAATAT
AAGTGGGAATACACTTACTACAGCAGAAACAAGGACAGAGATGGCTATGAATCATCATACAGGAGGAGGA
CTCTTTCAAGAGCCCATTACTCTAGACAGTCTTCAAGTCCAGAATTTAGAATTCAGTCTTTTTCTGAAAG
AACAAATGCGAGGAAGAAGAATCACAGTGAAAGGAAATACTACTACTATGAAAGGCGCCGGTCCAGGAGC
GTGTCCAGTAACAGGTCGAGGACTACATCCGCCGGGCCCGACCGGGTGAGAAATGAGAAGCCCGGAGGGA
AACGCAAGTACAAAACCCGGCATTTGGAAGGTACCAGTGAAGAGGCTCAGCCGGCTCGGGAGTTCACTTC
CAAAGGGAAGGACAGTCATTACCAAAAATCAAAATTGGATGGCAGTTATAAAAATGAGAGTGACAGCTTT
TCAGATAGCAGATCATCAGACAGAGAGACAAAACACAAGAGGAGGAGGAGGAGGACCCGGAGCCTAAGTG
TAGAGATAGTTTATGAAGGAAAGGCTACGGACACAAGCAAACACCATAAGAAGAAAAAGAAGAAACATAA
GAAGAAGCATAAGAAACACCATGGAGATAATACTTCACGGTCGCCGGTGGTTATAACCATCGACAGTGAC
AGCGATGGAGAGTCTGAAGTAAAGGCGGGTATTGAATGTAGCAATGGCAGTCTTCCACAGCCTATACAAG
ATGGAGCATTTGAAACTAAAGATGTTGTCACAATCGAAGATGAGCTTGGTGTCCTGGACAAGGACTGTGA
CGTTACAGCACTTGCTGATGACTTGAGCACCAGCCAAACTGTGGAGAATTGTGACTCGCCGGCAGTCCCA
GTTGAACAAACTCTTGATGTAAGAGAAGAAAGCACCTTTGCCTCTGATTTGGAGAGCCAGTCGAGTAATG
TGTCTATTCAGGCTGAACCATCGAGACCAGTGCCATCTCCACGGACCTCACTGTCATCAGTGTCTCCTGG
TAGAGACTGTGATGTGTCTTAA

Translation (1033 aa):
MGSQPPPPGSPLSREEGEAPPLVPAEEGRRRSRRVRLRGSCRHRPSLLSRRELASNGPAVPATASSEIMA
SAAKEFKMDNFSPKAGTSKLQQTVPADASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECP
LCKQPFDSIFHSVRAEDDFKEYVLRPSYNGSFTNPEVRRFRYRTTMTRERSASLYSPSSTVSRRTTTPPD
SGVLFEGLGISTRPRDVDIPQFMRQMALRGPTTTDERSLRKIQEQDIINFRRTLYRAGVRVRSIEDGGRY
RDISAEFFRRNPACLHRLVPWLKRELTVLFGAHGSLVNIVQHIIMSNVTRYDLESQAFVSDLRPFLLNRT
EHFIHEFISFARSPFNMAAFDQHANYDCPPSSEEGSRSDSSVITISPDEAETQELDMNASTVRQAPWDDE
TPGPSYSSSEQVHVGVSSLLNSSDSSDEELVSGGTTSQIQGVQTNDDVNNDSDSSSDNCVIVGFVKPLAE
RTPELVELSSDSEELGPYEKVETVKTQEQEQSYSSGDSDVSRASSPRSVLGKDEQMSKSHCDSDTRISSK
KEEKRSTSLPAPRDSSSTRGDRVCSPYNHRHRKGGRSRSSDSRSQSRSGHDPRNHRKHGKKRLRNKRSRS
RESSSRPRARKDKKRSRTRDSSWSRRSQTLSLSSGSTSRSRSRSSDHGKRRSRSRNRDRYYLRNNYGSKY
KWEYTYYSRNKDRDGYESSYRRRTLSRAHYSRQSSSPEFRIQSFSERTNARKKNHSERKYYYYERRRSRS
VSSNRSRTTSAGPDRVRNEKPGGKRKYKTRHLEGTSEEAQPAREFTSKGKDSHYQKSKLDGSYKNESDSF
SDSRSSDRETKHKRRRRRTRSLSVEIVYEGKATDTSKHHKKKKKKHKKKHKKHHGDNTSRSPVVITIDSD
SDGESEVKAGIECSNGSLPQPIQDGAFETKDVVTIEDELGVLDKDCDVTALADDLSTSQTVENCDSPAVP
VEQTLDVREESTFASDLESQSSNVSIQAEPSRPVPSPRTSLSSVSPGRDCDVS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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