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Report for CCDS37121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37121.1 Public Mus musculus 15 Sharpin 23 108 98 CCDS HistoryNCBI Gene:106025Re-query CCDS DB by CCDS ID:37121.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023211.15 ENSMUSP00000023211.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023211.15Link to Ensembl Protein Viewer:ENSMUSP00000023211.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000023211Re-query CCDS DB by Protein ID:ENSMUSP00000023211
Original member Current member NCBI NM_025340.2 NP_079616.2 Accepted alive Link to Nucleotide Sequence:NM_025340.2Link to Protein Sequence:NP_079616.2Re-query CCDS DB by Nucleotide ID:NM_025340Re-query CCDS DB by Protein ID:NP_079616Link to BLAST:NP_079616.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079616.2 380 Q91WA6-1 380 100% 0 0

Chromosomal Locations for CCDS 37121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76347271 76347387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76347482 76347594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76347664 76347817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76347896 76348004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76348086 76348227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76348301 76348435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76350055 76350229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76350481 76350678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGTCGCCGCCCGCCGGCGGTGCGGCAGTGGCTGCAGACCCTGCCTCACCTGTGGTGCTCCTGGCAGTGC
ACGCGGCGGTCAGGCCCCTGGGCGCTGGACAGGATGCCGAAGCGCAGCCGCGGAAGCTGCAATTGATAGC
GGACCCTGAGCGGCCTGGACGCTTCCGGCTAGGACTGTTAGGCACCGAGCCTGGGGCGGTCAGTTTAGAA
TGGCCCTTGGAGGCTATTTGTTACACCGTCCGTGGGCCTAACCAACACGAGCTGCAGCCTCCCCCTGGAG
GTCCTGGAACCTTCAGCGTGCACTTCCTCGACCCCGAGGAAGCACAGCAGTGGGCAGCACTGGTGCGAGA
TGCCACCGCAGAAGGACAAAATGGCAGTGGCAGCCCAGCCCCAGCCCCAGCCCCAGCAATGTGCCCCATT
TCTCCACCATGTTCTTCTATGGCTCAAATACCTAAAGCAACCCAACCTGAGGTGGATCTTCCTCAAAGTT
CTGGAAACTTCAAAAAAGAAGAGCTGGCTACACGCCTGTCCCAGGCCATTGCAGGTGGGGATGAGAAAGC
AGCGGCCCAAGTGGCAGCAGTCCTGGCGCAGCATCATGTGGCTCTCAATGTCCAGCTCATGGAGGCCTGG
TTCCCACCAGGTCCCATAAGGCTACAAGTCACAGTTGAAGACGCCACATCGGTTTTGTCCTCTTCATCGT
CTGCCCATGTCTCACTGAAGATCCACCCACATTGCTCCATTGCAGCCCTTCAGGATCAGGTGTTCTCAGA
GTTCGGTTTCCCACCAGCTGTGCAGCGCTGGGTCATTGGGCGGTGCCTGTGTATGCCTGAACGAAGCCTT
GCTTCCTATGGGGTCTCTCAAGATGGAGACCCTGCTTTTCTTTACTTGCTCTCGGCCCCCAGAGAAGTTT
CAGGACAAAGCCTTCAAAACTCCAAGATGGACCGGAAATTAGGCTTGTTTCCTCAGTCACTGGGGCTGCC
TCATGACCTCCAGCCGTCCAGTTCCAGTCTCCCAAGTCCCTCTCAGCCTGGCTGGTCTTGCCCTTCCTGC
ACTTTCATCAATGCCTCAAACCGCCCTGGCTGTGAGATGTGTAGCACCCAAAGGCCCTGTGCTTGGGATC
CTCTTGCTGCAGCTTCCACCTAG

Translation (380 aa):
MSPPAGGAAVAADPASPVVLLAVHAAVRPLGAGQDAEAQPRKLQLIADPERPGRFRLGLLGTEPGAVSLE
WPLEAICYTVRGPNQHELQPPPGGPGTFSVHFLDPEEAQQWAALVRDATAEGQNGSGSPAPAPAPAMCPI
SPPCSSMAQIPKATQPEVDLPQSSGNFKKEELATRLSQAIAGGDEKAAAQVAAVLAQHHVALNVQLMEAW
FPPGPIRLQVTVEDATSVLSSSSSAHVSLKIHPHCSIAALQDQVFSEFGFPPAVQRWVIGRCLCMPERSL
ASYGVSQDGDPAFLYLLSAPREVSGQSLQNSKMDRKLGLFPQSLGLPHDLQPSSSSLPSPSQPGWSCPSC
TFINASNRPGCEMCSTQRPCAWDPLAAAST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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