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Report for CCDS25618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25618.1 Public Mus musculus 11 Cd300e 23 108 98 CCDS HistoryNCBI Gene:217306Re-query CCDS DB by CCDS ID:25618.1Re-query CCDS DB by GeneID:217306See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25618.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062787.7 ENSMUSP00000054883.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062787.7Link to Ensembl Protein Viewer:ENSMUSP00000054883.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000062787Re-query CCDS DB by Protein ID:ENSMUSP00000054883
Original member Current member NCBI NM_172050.3 NP_742047.1 Accepted alive Link to Nucleotide Sequence:NM_172050.3Link to Protein Sequence:NP_742047.1Re-query CCDS DB by Nucleotide ID:NM_172050Re-query CCDS DB by Protein ID:NP_742047Link to BLAST:NP_742047.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742047.1 196 Q8K249 196 100% 0 0

Chromosomal Locations for CCDS 25618.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115053261 115053360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115054476 115054578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115055246 115055593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115061985 115062024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGAGGCTATGTGCAGGTCTGCTCCTTCTCTGCTTCCAAGGTTGTTTGTCTCTGACGGGCCCTGGCTCTG
TGTCTGGCTACGTAGGAGGCTCTCTCCGTGTGCAGTGTCAATATAGTCCATCATATAAGGGCTATATGAA
ATACTGGTGCCGAGGACCGCATGACACGACATGTAAAACTATTGTAGAAACCGACGGAAGTGAGAAAGAA
AAGAGGAGTGGCCCGGTGTCCATCAGAGACCATGCTTCGAACTCCACCATCACAGTGATCATGGAGGACC
TCAGCGAAGACAATGCTGGGTCTTACTGGTGCAAGATTCAGACTTCCTTTATCTGGGATTCGTGGTCACG
TGATCCATCGGTCAGTGTAAGGGTGAATGTTTTTCCAGCCACAACTCCTACACTCCCAGCCACAACTGCT
ATCCTCCCACTAGTGAATTCTGGGCAGAACCTGAGGATTAGTACTAATGTGATGTTCATCTTCCAACTGT
GGTCCCTGCTCAGCAGCATCCAGTTCCAGGTCCTGGTCTTCCTGAAGCTGCCTCTGTTTCTGAGCATGCT
CTGTGCTATCTTCTGGGTGAACAGACTTTAG

Translation (196 aa):
MRLCAGLLLLCFQGCLSLTGPGSVSGYVGGSLRVQCQYSPSYKGYMKYWCRGPHDTTCKTIVETDGSEKE
KRSGPVSIRDHASNSTITVIMEDLSEDNAGSYWCKIQTSFIWDSWSRDPSVSVRVNVFPATTPTLPATTA
ILPLVNSGQNLRISTNVMFIFQLWSLLSSIQFQVLVFLKLPLFLSMLCAIFWVNRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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