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Report for CCDS16953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16953.1 Public Mus musculus 2 Edem2 23 108 98 CCDS HistoryNCBI Gene:108687Re-query CCDS DB by CCDS ID:16953.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040833.4 ENSMUSP00000041202.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040833.4Link to Ensembl Protein Viewer:ENSMUSP00000041202.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000040833Re-query CCDS DB by Protein ID:ENSMUSP00000041202
Original member Current member NCBI NM_145537.2 NP_663512.2 Accepted alive Link to Nucleotide Sequence:NM_145537.2Link to Protein Sequence:NP_663512.2Re-query CCDS DB by Nucleotide ID:NM_145537Re-query CCDS DB by Protein ID:NP_663512Link to BLAST:NP_663512.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663512.2 577 Q8BJT9 577 100% 0 0

Chromosomal Locations for CCDS 16953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155702095 155702592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155705655 155705776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155708932 155709076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155710844 155710968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155713338 155713479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155716010 155716221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155718264 155718389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155722432 155722537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155726635 155726674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155728891 155729001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155729231 155729337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGCCTTTCCGGCTACTCATCCCGCTCGGCCTCGTGTGCGTGCTGCTACCCCTGCACCATGGTGCGCCAG
GCCCCGACGGCACCGCGCCCGACCCCGCCCACTACAGGGAGCGAGTCAAGGCCATGTTCTACCACGCCTA
CGACAGTTACCTGGAAAATGCCTTTCCCTACGATGAGCTGAGACCTCTCACCTGTGATGGGCACGACACC
TGGGGCAGTTTTTCTCTGACGCTAATTGATGCCCTGGACACCTTGCTGATTTTGGGGAATACCTCTGAAT
TCCAAAGAGTAGTGGAGGTTCTTCAGGACAATGTGGACTTTGATATCGACGTGAACGCCTCTGTGTTCGA
AACCAACATCCGAGTGGTAGGAGGACTCCTTTCTGCTCATCTCTTGTCAAAGAAGGCCGGTGTGGAGGTG
GAAGCCGGGTGGCCTTGTTCTGGGCCTCTCCTCAGGATGGCGGAGGAAGCAGCCCGGAAACTCCTCCCAG
CATTTCAGACCCCCACGGGCATGCCCTATGGAACTGTGAACCTGCTTCATGGCGTGAACCCTGGAGAGAC
CCCTGTTACCTGTACAGCAGGGATTGGGACCTTCATTGTGGAATTTGCTACCCTGAGCAGCCTCACCGGT
GACCCTGTGTTTGAAGATGTGGCCAGAGTGGCCCTGATGCGTCTCTGGGAGAGCCGGTCAGATATCGGGC
TGGTTGGCAATCACATCGATGTGCTCACTGGCAAGTGGGTGGCCCAGGATGCAGGCATCGGGGCTGGTGT
GGATTCCTATTTTGAGTACCTGGTAAAAGGAGCCATCCTTCTTCAGGATAAGAAACTCATGGCCATGTTC
CTAGAGTACAACAAAGCCATCCGGAATTACACGCACTTCGATGACTGGTACCTCTGGGTGCAGATGTACA
AGGGGACCGTGTCAATGCCTGTCTTCCAGTCCTTGGAGGCCTACTGGCCTGGCCTTCAGAGCCTTATTGG
AGACATTGACAATGCCATGAGGACCTTTCTCAACTACTACACTGTATGGAAGCAGTTTGGGGGGCTGCCA
GAATTCTACAACATTCCTCAGGGATACACAGTGGAGAAGCGAGAAGGCTACCCACTCCGACCGGAGCTCA
TCGAGAGCGCAATGTACCTCTACCGCGCCACTGGGGATCCCACTCTCTTAGAACTTGGGAGAGACGCTGT
GGAATCCATTGAGAAAATCAGCAAGGTGGAGTGTGGATTTGCCACGATCAAGGACCTCCGGGACCACAAG
CTTGACAACCGCATGGAGTCTTTCTTCCTGGCTGAAACTGTGAAATACCTCTATCTTCTGTTCCACCCAA
ACAACTTCATCCACAACAATGGCTCCACCTTTGACTCTGTGATGACTCCCCATGGGGAGTGCATCCTAGG
AGCCGGGGGCTACATCTTCAACACGGAGGCTCACCCCATTGACCCTGCTGCCTTGCACTGCTGCCGGAGG
CTCAAGGAGGAGCAGTGGGAAGTGGAGGACTTGATAAAGGAGTTCTACTCCCTCAAACAGAGCAGGCCAA
AGAGAGCTCAGAGGAAGACAGTGAGGTCGGGGCCCTGGGAGCCCCAGTCAGGGCCAGCCACGCTCTCCTC
ACCTGCAAACCAGCCCAGGGAGAAGCAGCCTGCCCAGCAGCGAACCCCGCTTCTCAGCTGCCCCAGCCAG
CCCTTCACCTCTAAGCTGGCATTGCTAGGCCAGGTTTTCCTAGACTCCTCATAG

Translation (577 aa):
MPFRLLIPLGLVCVLLPLHHGAPGPDGTAPDPAHYRERVKAMFYHAYDSYLENAFPYDELRPLTCDGHDT
WGSFSLTLIDALDTLLILGNTSEFQRVVEVLQDNVDFDIDVNASVFETNIRVVGGLLSAHLLSKKAGVEV
EAGWPCSGPLLRMAEEAARKLLPAFQTPTGMPYGTVNLLHGVNPGETPVTCTAGIGTFIVEFATLSSLTG
DPVFEDVARVALMRLWESRSDIGLVGNHIDVLTGKWVAQDAGIGAGVDSYFEYLVKGAILLQDKKLMAMF
LEYNKAIRNYTHFDDWYLWVQMYKGTVSMPVFQSLEAYWPGLQSLIGDIDNAMRTFLNYYTVWKQFGGLP
EFYNIPQGYTVEKREGYPLRPELIESAMYLYRATGDPTLLELGRDAVESIEKISKVECGFATIKDLRDHK
LDNRMESFFLAETVKYLYLLFHPNNFIHNNGSTFDSVMTPHGECILGAGGYIFNTEAHPIDPAALHCCRR
LKEEQWEVEDLIKEFYSLKQSRPKRAQRKTVRSGPWEPQSGPATLSSPANQPREKQPAQQRTPLLSCPSQ
PFTSKLALLGQVFLDSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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