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Report for CCDS22549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22549.1 Public Mus musculus 8 Ciapin1 23 108 98 CCDS HistoryNCBI Gene:109006Re-query CCDS DB by CCDS ID:22549.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034233.14 ENSMUSP00000034233.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034233.14Link to Ensembl Protein Viewer:ENSMUSP00000034233.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034233Re-query CCDS DB by Protein ID:ENSMUSP00000034233
Original member Current member EBI ENSMUST00000162538.8 ENSMUSP00000125451.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162538.8Link to Ensembl Protein Viewer:ENSMUSP00000125451.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162538Re-query CCDS DB by Protein ID:ENSMUSP00000125451
Original member Current member NCBI NM_134141.4 NP_598902.1 Accepted alive Link to Nucleotide Sequence:NM_134141.4Link to Protein Sequence:NP_598902.1Re-query CCDS DB by Nucleotide ID:NM_134141Re-query CCDS DB by Protein ID:NP_598902Link to BLAST:NP_598902.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598902.1 309 Q8WTY4 309 100% 0 0

Chromosomal Locations for CCDS 22549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94823097 94823207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94823653 94823731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94825216 94825331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94826635 94826708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94828277 94828439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94829154 94829230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94831773 94831925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94832515 94832671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGAGGAGTTTGGGATCTCCCCTGGCCAGCTTGTGGCAGTGTTCTGGGACAAGTCATCTCCTGAGGAAG
CCCTAAAAAAGCTGGTGGCTAGACTGCAAGAGTTAACTGGCAGCGAGGGCCAGGTATTCATGGAAAACGT
CACCCAGCTGTTGCAGTCTTCGCATAAGGAATCCAGCTTCGATGTCATTCTGTCGGGTGTAGTCCCAGGA
AGCACCTCTCTGCACAGTGCTGAGGTTCTGGCTGAGATGGCCCGGATCCTCCGGCCAGGGGGCTGTCTTT
TTCTGAAAGAACCAGTGGAGACAGCTGAAGTTAACAATGACAAAATGAAGACGGCCTCTAAGCTATGTTC
AGCCCTGACTCTTTCTGGCCTCGTGGAAATAAAAGAGTTGCAGAGGGAGGCCTTAAGCCCTGAGGAGGTA
CAGTCCGTGCAGGAGCACCTGGGCTACCACAGTGACAGCCTGCGCTCAGTCCGTGTCACTGGCAAGAAGC
CAAACTTTGAAGTGGGTTCTTCTAGCCAGCTAAAGCTTCCCAACAAGAAGTCTTCTTCAGTGAAGCCTGT
TGTGGATCCTGCTGCTGCCAAGCTCTGGACCCTCTCAGCAAATGACATGGAGGATGACAGTGTGGATCTC
ATTGACTCAGACGAGCTGCTTGATCCAGAGGATTTGAAGAGGCCTGACCCAGCCTCCCTGAAGGCTCCTT
CATGTGGGGAAGGGAAAAAGAGGAAGGCCTGTAAGAACTGCACCTGTGGCCTCGCAGAGGAACTGGAGCG
GGAGCAGTCCAAGGCGCAGAGCTCTCAGCCCAAGTCAGCCTGTGGAAATTGCTACCTGGGTGACGCTTTC
CGCTGTGCCAACTGCCCCTACCTCGGGATGCCAGCCTTCAAGCCTGGCGAGCAGGTGCTCCTGAGCAATA
GCAATCTCCAGGATGCCTAG

Translation (309 aa):
MEEFGISPGQLVAVFWDKSSPEEALKKLVARLQELTGSEGQVFMENVTQLLQSSHKESSFDVILSGVVPG
STSLHSAEVLAEMARILRPGGCLFLKEPVETAEVNNDKMKTASKLCSALTLSGLVEIKELQREALSPEEV
QSVQEHLGYHSDSLRSVRVTGKKPNFEVGSSSQLKLPNKKSSSVKPVVDPAAAKLWTLSANDMEDDSVDL
IDSDELLDPEDLKRPDPASLKAPSCGEGKKRKACKNCTCGLAEELEREQSKAQSSQPKSACGNCYLGDAF
RCANCPYLGMPAFKPGEQVLLSNSNLQDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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