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Report for CCDS85678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85678.1 Public Mus musculus 9 Ube2q2 23 108 98 CCDS HistoryNCBI Gene:109161Re-query CCDS DB by CCDS ID:85678.1Re-query CCDS DB by GeneID:109161See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122441.1 ENSMUSP00000112745.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122441.1Link to Ensembl Protein Viewer:ENSMUSP00000112745.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122441Re-query CCDS DB by Protein ID:ENSMUSP00000112745
Original member Current member NCBI NM_001346658.1 NP_001333587.1 Accepted alive Link to Nucleotide Sequence:NM_001346658.1Link to Protein Sequence:NP_001333587.1Re-query CCDS DB by Nucleotide ID:NM_001346658Re-query CCDS DB by Protein ID:NP_001333587Link to BLAST:NP_001333587.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333587.1 255 Q8K2Z8-2 255 100% 0 0

Chromosomal Locations for CCDS 85678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 55168278 55168307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55176191 55176247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55180473 55180613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55183102 55183186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55184904 55184964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55185670 55185760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55191842 55191900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55194987 55195035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55195424 55195519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55203701 55203767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55205960 55205991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGCTAGATCAACCACTACCCACGGGTCAGAATGGGACAACTGAAGAAGTAACTTCAGAAGAAGAGGAAG
AGGAGGAGATGGCTGAAGATATAGAAGACTTGGATCACTATGAGATGAAGGAAGAAGAACCTATTAATGG
GAAAAAGTCAGAGGATGAAGGGATTGAAAAAGAAAATTTGGCAATATTAGAGAAAATCAGGAAGACTCAA
AGGCAAGACCATTTAAATGGTGCAGTGTCTGGGTCAGTACAAGCATCAGACAGACTGATGAAGGAGCTCA
GGGACGTCTACAGATCACAGAGCTACAAGGCAGGGATTTATTCAGTGGAGCTAATAAATGACAGCTTATA
TGACTGGCATGTCAAACTACACAAGGTTGACTCTGATAGTCCTTTGCACAGTGATCTTCAGATCTTAAAA
GAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAAGGATAATTTTCCATTTGATCCTCCGT
TTGTTAGAGTGGTGTTACCTGTTCTCTCAGGAGGGTATGTGTTGGGTGGAGGAGCACTTTGTATGGAACT
TCTCACAAAACAGGGCTGGAGCAGTGCCTACTCAATAGAATCTGTCATCATGCAGATCAATGCCACCTTA
GTGAAAGGCAAAGCCCGGGTGCAGTTTGGAGCAAATAAGAATCAGTATAATCTAGCACGAGCCCAACAGT
CCTATAATTCCATTGTACAGATACATGAGAAAAATGGCTGGTACACACCTCCAAAGGAAGATGGCTAA

Translation (255 aa):
MLDQPLPTGQNGTTEEVTSEEEEEEEMAEDIEDLDHYEMKEEEPINGKKSEDEGIEKENLAILEKIRKTQ
RQDHLNGAVSGSVQASDRLMKELRDVYRSQSYKAGIYSVELINDSLYDWHVKLHKVDSDSPLHSDLQILK
EKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATL
VKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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