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Report for CCDS37625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37625.1 Public Mus musculus 17 Supt3 23 108 98 CCDS HistoryNCBI Gene:109115Re-query CCDS DB by CCDS ID:37625.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37625.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050630.13 ENSMUSP00000050783.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050630.13Link to Ensembl Protein Viewer:ENSMUSP00000050783.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050630Re-query CCDS DB by Protein ID:ENSMUSP00000050783
Original member Current member NCBI NM_178652.3 NP_848767.1 Accepted alive Link to Nucleotide Sequence:NM_178652.3Link to Protein Sequence:NP_848767.1Re-query CCDS DB by Nucleotide ID:NM_178652Re-query CCDS DB by Protein ID:NP_848767Link to BLAST:NP_848767.1

Chromosomal Locations for CCDS 37625.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44786610 44786710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44923179 44923263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44991734 44991820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44994317 44994407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45003090 45003229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45033238 45033313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45036712 45036824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45038076 45038183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45041216 45041386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45048282 45048392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45119143 45119184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGAATAATGCTGCAGCTAGCCCGATGTCTACTACCACTTCAAGTAGTGGAAGAAATGCAGGGAAGACTA
TAAGCTTTGCGGCCGAGTTGCAGAGTATGATGTTTTCTCTAGGTGATGCTAGGAGGCCTCTCCATGAAAC
TGCAGTTTTGGTGGAAGATGTGGTTCATACACAACTAATTAACCTGTTACAGCAAGCTGCAGAAGTCTCT
CAGCTTCGGGGAGCAAGAGTGATCTCTGCTGAAGATCTTCTGTTCTTGATGAGAAAAGATAAGAAAAAAC
TTAGAAGACTTCTAAAGTACATGTTTATCCGAGACTACAAGTCAAAGATCATCAAAGGCATTGACGAGGA
TGACCTCCTGGAAGAAAAACTGAGTGGCAGCAGCGGTACAAACAAGAGACAGAAGATCGCTCAGGACTTG
ATCAACTCTATCGACCAGACAGGAGAGCTGCTGGCAATGTTTGAAGACAACGAGCTTGATGATGTCAAAC
AGGAGAGAATGGAGAGAGCAGAAAGACAGACTCGTACTATGGATTCAGCTCAATATGCAGAATTCTGTGA
AAGCCGACAGTTAAGTTTCTCCAAAAAAGCTTCCAAATTCCGAGACTGGCTGGACTGCAGCAGCATGGAG
ATAAAACCCAATGTCATAGCTATGGAAATCCTGGCATATCTGGCATACGAAACCGTGGCCCAGCTGGTGG
ATCTGGCTCTTCTAGTGAGGCAAGATATGGTGTCCAAGGCAGGGGACCCCTTCAGCCATGCCATTTCTGC
AACCTTCATTCAGTACCACAACTCTGCTGAGGGGTCCTCATGTTTGAAGTCCAGCCCAGACTCTCCTGAG
AACACACCTCCTCCTACACCAACAGCTCCCTCTTCTGGATCACAGCATTCAGGTAGAGCTGCATCTGGTT
CTTTGGGGAATGGGAACACAGGACAAGACACTGCCAAAACCAAGCAGCGGAAGAGGAAAAAGAGCACTGC
GGCCTGTGGTGTCGAGGCTCACAGCGATGCCATCCAGCCCTGCCACATCAGAGAGGCCATTCGACGCTAC
GGCCACAAGATTGGCCCTCTCTCCCCATTCACAAGTGCCTACCGAAGGAGTGGGATGGCTTTCCTGGCCT
GCTGA

Translation (374 aa):
MNNAAASPMSTTTSSSGRNAGKTISFAAELQSMMFSLGDARRPLHETAVLVEDVVHTQLINLLQQAAEVS
QLRGARVISAEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIIKGIDEDDLLEEKLSGSSGTNKRQKIAQDL
INSIDQTGELLAMFEDNELDDVKQERMERAERQTRTMDSAQYAEFCESRQLSFSKKASKFRDWLDCSSME
IKPNVIAMEILAYLAYETVAQLVDLALLVRQDMVSKAGDPFSHAISATFIQYHNSAEGSSCLKSSPDSPE
NTPPPTPTAPSSGSQHSGRAASGSLGNGNTGQDTAKTKQRKRKKSTAACGVEAHSDAIQPCHIREAIRRY
GHKIGPLSPFTSAYRRSGMAFLAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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