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Report for CCDS38087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38087.1 Public Mus musculus 2 Fam163b 23 108 98 CCDS HistoryNCBI Gene:109349Re-query CCDS DB by CCDS ID:38087.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151224.2 ENSMUSP00000127556.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151224.2Link to Ensembl Protein Viewer:ENSMUSP00000127556.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151224Re-query CCDS DB by Protein ID:ENSMUSP00000127556
Original member Current member NCBI NM_175427.4 NP_780636.1 Accepted alive Link to Nucleotide Sequence:NM_175427.4Link to Protein Sequence:NP_780636.1Re-query CCDS DB by Nucleotide ID:NM_175427Re-query CCDS DB by Protein ID:NP_780636Link to BLAST:NP_780636.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780636.1 167 Q8BUM6 167 100% 0 0

Chromosomal Locations for CCDS 38087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27112480 27112890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27113548 27113640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGACAGCCGGGACTGTGGTCATCACTGGGGGCATCTTGGCAACTGTGATTCTGCTCTGTATCATCGCTG
TTCTGTGCTACTGTCGGCTTCAGTATTACTGCTGCAAGAAGGACGAATCCGAGGAGGACGAGGAGGAACC
CGACTTCGCTGTGCATTCCCACCTGCCGCCCCTGCATTCCAACCGCAACCTCGTGTTGACCAACGGGCCT
GCTCTCTACCCAGCTGCCACCACCTCTTTCAGCCAAAAGTCCCCGCAGGCCCGGGCCCTCTGCCGCAGCT
GCTCCCACTACGAGCCGCCCACCTTCTTCCTGCAGGAGCCAGAGGACGAAGACTTTGAGGGTGTGCGCAA
CGGCGGGGGGCGTGTGGCCTACAAAAGCATCAGCCAGGAAGATGTGGAGCTGCCCTCTGCAAGCTTCGGA
GGCCTGCAGGCGCTCAACCCCAACCGCCTCTCTGCCATGCGGGAGGCCTTTTCCCGAAGCCGCAGTGTAA
GCACTGACGTGTGA

Translation (167 aa):
MTAGTVVITGGILATVILLCIIAVLCYCRLQYYCCKKDESEEDEEEPDFAVHSHLPPLHSNRNLVLTNGP
ALYPAATTSFSQKSPQARALCRSCSHYEPPTFFLQEPEDEDFEGVRNGGGRVAYKSISQEDVELPSASFG
GLQALNPNRLSAMREAFSRSRSVSTDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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