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Report for CCDS21103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21103.1 Public Mus musculus 7 Upk1a 23 108 98 CCDS HistoryNCBI Gene:109637Re-query CCDS DB by CCDS ID:21103.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21103.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006476.5 ENSMUSP00000006476.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006476.5Link to Ensembl Protein Viewer:ENSMUSP00000006476.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000006476Re-query CCDS DB by Protein ID:ENSMUSP00000006476
Original member Current member NCBI NM_026815.2 NP_081091.1 Accepted alive Link to Nucleotide Sequence:NM_026815.2Link to Protein Sequence:NP_081091.1Re-query CCDS DB by Nucleotide ID:NM_026815Re-query CCDS DB by Protein ID:NP_081091Link to BLAST:NP_081091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081091.1 257 Q9D132 257 100% 0 0

Chromosomal Locations for CCDS 21103.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30603598 30603642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30603772 30603855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30605061 30605240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30606875 30606982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30607131 30607205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30609614 30609814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30612387 30612467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGCTTCTGCAGCGACAGAGGGAGAGAAGGGGTCTCCTGTGGTGGTGGGGCTGCTGGTCGTGGGCAACA
TCATTATTTTGCTGTCAGGCCTGGCCCTGTTTGCGGAGACAGTGTGGGTAACAGCTGACCAGTACCGCGT
GTACCCACTGATGGGCGTCTCAGGCAAGGATGATGTCTTCGCTGGCGCCTGGATTGCCATCTTCTGCGGC
TTCTCCTTCTTCGTCGTGGCCAGCTTTGGTGTAGGAGCTGCGCTCTGTCGTCGTCGGTACATGATCCTCA
CGTACCTGCTGCTGATGCTCATCGTCTACATCTTCGAGTGTGCCTCCTGCATCACATCCTACACCCACCG
CGACTATATGGTGTCCAACCCATCCCTGATAACCAAGCAAATGTTGACCTACTACAGTGCAGACACTGAC
CAGGGCCAGGAGCTAACCCGACTCTGGGACCGGATCATGATTGAGCAAGAGTGTTGTGGCACATCTGGCC
CCATGGACTGGGTGAATTACACATCAGCCTTCCGGGCAGCCACCCCGGAAGTGGTGTTCCCGTGGCCCCC
ACTGTGCTGTCGTCGGACAGGCAACTTCATCCCCATCAATGAAGATGGCTGCCGAGTAGGCCACATGGAC
TACCTGTTTACCAAGGGTTGCTTCGAGCACATCGGCCATGCCATTGATAGCTACACGTGGGGCATATCGT
GGTTTGGCTTTGCCATCTTGATGTGGACCCTCCCTGTGATGTTGATAGCCATGTATTTCTACACCACTCT
CTGA

Translation (257 aa):
MASAATEGEKGSPVVVGLLVVGNIIILLSGLALFAETVWVTADQYRVYPLMGVSGKDDVFAGAWIAIFCG
FSFFVVASFGVGAALCRRRYMILTYLLLMLIVYIFECASCITSYTHRDYMVSNPSLITKQMLTYYSADTD
QGQELTRLWDRIMIEQECCGTSGPMDWVNYTSAFRAATPEVVFPWPPLCCRRTGNFIPINEDGCRVGHMD
YLFTKGCFEHIGHAIDSYTWGISWFGFAILMWTLPVMLIAMYFYTTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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