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Report for CCDS39000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39000.1 Public Mus musculus 5 Fam133b 23 108 98 CCDS HistoryNCBI Gene:68152Re-query CCDS DB by CCDS ID:39000.1Re-query CCDS DB by GeneID:68152See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39000.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115527.7 ENSMUSP00000111189.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115527.7Link to Ensembl Protein Viewer:ENSMUSP00000111189.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115527Re-query CCDS DB by Protein ID:ENSMUSP00000111189
Original member Current member NCBI NM_001042501.1 NP_001035966.1 Accepted alive Link to Nucleotide Sequence:NM_001042501.1Link to Protein Sequence:NP_001035966.1Re-query CCDS DB by Nucleotide ID:NM_001042501Re-query CCDS DB by Protein ID:NP_001035966Link to BLAST:NP_001035966.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035966.1 245 Q9CVI2-1 245 100% 0 0

Chromosomal Locations for CCDS 39000.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 3543924 3543947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3554639 3554736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3557744 3557822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3558473 3558547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3558661 3558693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3559097 3559159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3559606 3559698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3561039 3561089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3564241 3564327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3565703 3565750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3568987 3569073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGGGAAACGGGATAATCGCGTGGCCTACATGAATCCAATAGCAATGGCTCGATCAAGGGGTCCAATCC
AGTCTTCAGGACCAACAATCCAGGATTATCTGAATCGACCAAGGCCTACCTGGGAGGAAGTCAAGGAACA
GCTGGAAAAGAAAAAGAAGGGCTCCAAGGCTTTGGCTGAGTTTGAAGAAAAAATGAATGAGAATTGGAAG
AAAGAACTAGAAAAACATAGAGAAAAATTATTAAGTGGAAATGAGAGCTCATCCAAAAAAAGACAGAAAA
AGAAAAAAGAAAAGAAGAAATCTGGTAGGTATTCATCTTCTTCTTCATCGAGCTCTGATTCTTCCAGCAG
TTCTTCAGATTCCGAAGATGAGGATAAAAAACAAACAAAAAGAAGGAAGAAAAAGAAGAGCCGTTGCCAT
AAGTCTCCTGAGAGCTCGGGGTCGGATTCGGCTTCAGACAGCAAGGATGGTTCAAAAAAGAAAAAGAAGT
CCAAGGATGTAACTGAAAGAGAAAAGGACACTAAAGGTCTCAGCAAAAAGAGAAAGATGTACGAAGATAA
ACCGTTGTCATCTGAGTCGCTGTCAGAGTCAGACTGTGGAGAGGTGCAAGCAAAAAGGAAGAAAAGCGGT
GAAGAGCGTGAGAGAACAACAGACAAAGCCAAAAAGAGAAGGAAGCATAAGAAGCACAGCAAGAAGAAGA
AAAAGAAGGCCGCCAGCTCCAGCTCAGACTCGCCGTAG

Translation (245 aa):
MGKRDNRVAYMNPIAMARSRGPIQSSGPTIQDYLNRPRPTWEEVKEQLEKKKKGSKALAEFEEKMNENWK
KELEKHREKLLSGNESSSKKRQKKKKEKKKSGRYSSSSSSSSDSSSSSSDSEDEDKKQTKRRKKKKSRCH
KSPESSGSDSASDSKDGSKKKKKSKDVTEREKDTKGLSKKRKMYEDKPLSSESLSESDCGEVQAKRKKSG
EERERTTDKAKKRRKHKKHSKKKKKKAASSSSDSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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