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Report for CCDS26490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26490.1 Public Mus musculus 13 Dek 23 108 98 CCDS HistoryNCBI Gene:110052Re-query CCDS DB by CCDS ID:26490.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021807.12 ENSMUSP00000021807.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021807.12Link to Ensembl Protein Viewer:ENSMUSP00000021807.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021807Re-query CCDS DB by Protein ID:ENSMUSP00000021807
Original member Current member NCBI NM_025900.2 NP_080176.2 Accepted alive Link to Nucleotide Sequence:NM_025900.2Link to Protein Sequence:NP_080176.2Re-query CCDS DB by Nucleotide ID:NM_025900Re-query CCDS DB by Protein ID:NP_080176Link to BLAST:NP_080176.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080176.2 380 Q7TNV0 380 100% 0 0

Chromosomal Locations for CCDS 26490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 47086068 47086079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47086425 47086493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47088025 47088173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47088477 47088615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47098155 47098343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47099343 47099463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47100174 47100268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47101623 47101732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47101973 47102074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 47105572 47105728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGTCGGCGGCGGCGGCCCCCGCTGCGGAGGGAGAGGACGCCCCCGTGCCGCCCTCATCCGAGAAGGAAC
CCGAGATGCCGGGTCCCAGGGAAGAGAGTGAGGAGGAGGAGGAGGATGACGAAGACGATGATGAAGAGGA
CGAGGAGGAAGAAAAAGAAAAGAGTCTTATCGTGGAAGGCAAGAGAGAGAAGAAGAAAGTAGAGAGACTG
ACGATGCAAGTGTCTTCCTTACAGAGAGAGCCATTTACAGTGACACAAGGGAAGGGTCAGAAACTTTGTG
AAATTGAAAGGATACATTTCTTTCTGAGTAAGAAAAAACCAGATGAACTTAGAAATCTACACAAACTGCT
TTACAACAGGCCGGGCACAGTGTCCTCGTTGAAGAAGAACGTGGGTCAGTTCAGTGGCTTTCCATTCGAA
AAAGGCAGTACCCAGTATAAAAAGAAGGAAGAAATGTTGAAAAAGTTTCGAAATGCCATGTTAAAGAGCA
TCTGTGAGGTTCTTGATTTAGAGAGGTCAGGCGTGAACAGCGAACTCGTGAAGAGGATCTTGAACTTCTT
AATGCATCCAAAGCCTTCTGGCAAACCATTACCAAAATCCAAAAAATCTTCCAGCAAAGGTAGTAAAAAG
GAACGGAACAGTTCTGGAACAACAAGGAAGTCAAAGCAAACTAAATGCCCTGAAATTCTGTCAGATGAGT
CTAGTAGTGATGAAGATGAGAAGAAAAATAAGGAAGAGTCTTCGGAAGATGAAGAGAAAGAAAGTGAAGA
GGAGCAACCACCAAAAAAGACATCTAAAAAAGAAAAAGCAAAACAGAAAGCTACTGCTAAAAGTAAAAAA
TCTGTGAAGAGTGCTAATGTTAAGAAGGCAGACAGCAGTACCACCAAGAAGAATCAAAAAAGTTCCAAAA
AAGAGTCTGAATCTGAAGACAGTTCTGATGATGAACCCTTAATTAAAAAATTGAAAAAGCCACCTACAGA
TGAAGAGCTAAAGGAAACAGTGAAGAAATTACTGGCTGATGCTAACTTGGAAGAAGTCACAATGAAGCAG
ATTTGCAAAGAGGTATATGAAAATTATCCTGCTTATGATTTGACTGAGAGGAAAGATTTCATTAAAACAA
CTGTAAAAGAGCTAATTTCTTGA

Translation (380 aa):
MSAAAAPAAEGEDAPVPPSSEKEPEMPGPREESEEEEEDDEDDDEEDEEEEKEKSLIVEGKREKKKVERL
TMQVSSLQREPFTVTQGKGQKLCEIERIHFFLSKKKPDELRNLHKLLYNRPGTVSSLKKNVGQFSGFPFE
KGSTQYKKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRILNFLMHPKPSGKPLPKSKKSSSKGSKK
ERNSSGTTRKSKQTKCPEILSDESSSDEDEKKNKEESSEDEEKESEEEQPPKKTSKKEKAKQKATAKSKK
SVKSANVKKADSSTTKKNQKSSKKESESEDSSDDEPLIKKLKKPPTDEELKETVKKLLADANLEEVTMKQ
ICKEVYENYPAYDLTERKDFIKTTVKELIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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