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Report for CCDS38435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38435.1 Public Mus musculus 3 Tsc22d2 23 108 98 CCDS HistoryNCBI Gene:72033Re-query CCDS DB by CCDS ID:38435.1Re-query CCDS DB by GeneID:72033See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38435.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099090.6 ENSMUSP00000096688.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099090.6Link to Ensembl Protein Viewer:ENSMUSP00000096688.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099090Re-query CCDS DB by Protein ID:ENSMUSP00000096688
Original member Current member NCBI NM_001081229.2 NP_001074698.1 Accepted alive Link to Nucleotide Sequence:NM_001081229.2Link to Protein Sequence:NP_001074698.1Re-query CCDS DB by Nucleotide ID:NM_001081229Re-query CCDS DB by Protein ID:NP_001074698Link to BLAST:NP_001074698.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074698.1 769 E9Q7M2-1 769 100% 0 0

Chromosomal Locations for CCDS 38435.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 58415689 58417613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58428228 58428299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58459331 58459382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58460008 58460268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2310 nt):
ATGTCCAAGATGCCGGCCAAGAAGAAGAGCTGCTTCCAGATCACCAGTGTCACCACGGCTCAGGTGGCCA
CCAGCATCACCGAGGACACCGAGAGCCTGGACGACCCGGACGAGTCGCGCACGGAGGACGTGTCCTCCGA
GATCTTCGACGTTTCCCGGGCCACGGATTACGGCCCGGAGGAGGTGTGCGAGCGTAGCTCCTCGGAAGAG
ACGCTCAACAATGTCGGGGATGCGGAAACTCCCGGGACCGTGTCCCCGAACCTCATCCTGGATGGGCAGC
TGGCAGCCGCTTCAGCTGCGCCCGCCAACGGAGGCGGCGGTGGCGTGTCGGCCCGGAGCGTGGCGGGGGC
ACTCGCCCAGACCCTGGCGGCGGCCGCCGCTTCGGTGTCCACTCCTGGGCCGAGTAGTGCAACTCCATCT
CAGCCCCCTGCCACTTGTAGTTCGCGTTTCCGCGTGATCAAACTAGACCACGGGAGCGGGGAGCCGTACC
GGCGCGGCCGATGGACGTGTATGGAATACTACGAGCGGGATTCGGATAGCAGCGTCCTCACCAGGTCCGG
GGATTGCATTAGACACAGCAATACTTTGGAGCAGACTGCGGAGCGGGACAGCGGCCTGGGAGCCACCGGA
GGGTCGGTGGTGGTGGTGGTGGCCTCCATGCAGGGGGCGCACGGGCTGGACTCGGGAACTGACAGCTCCT
TGACTGCTGTGTCACAGCTACCCCCGTCGGAGAAAATGAGCCAGCCCACTCTCGCCCAGCCGCAGAGTTT
CAGCGTCGGGCAGCCGCAGCCTCCACCGCCCGTAGGTGGGGCTGTGGCTCCAAGTTCGGCGTCGCTGCCG
CCGTTCCCGGGAGCGGCGACCGGGCCGCAGCCAATGACAGCAGCCGTTCAGCCAACCCAGCTCCAGGGAG
CCGTGGCCGGAGGCGCCCTCCCCGGGCCTGTCGGTCAGGGGCTGCCGCCGCCGCCGAATGTCAACCTGGC
GCAGCCTGTGGCCCTGGCAGCTCAGCCCGGCCCGGCCGGCGGCTCCTCGTTGTCACAGCAGTTCGCCTAT
CCCCAGCCTCAGATACCACCCGGGCATTTGTTGCCGATGCAGCCATCCGGCCAGAGTGAGTACCTGCCGC
CGCACGTGGCCCTGCAGCCGCCAAGCCCTGCGCAGCCCTTGTCTACCAGCGCTAGCGCCACCTCTGCTTC
CGCGGCCAGCTTTCCTCTGGGGTCTGGCCAGAGCGTCTCCTCCTTGGGTGCCCAGATGATGGGCGCCTCC
GCCCAGCCCAGTGAAGCTGTGGCCCCGGGTCCGGTTCCTGTAGGCCAGGCCGCTCCTTGTCAGCCGGCCG
GAGTGGCCCCAGCTGCTCTAGGAGGCGTGGTGCAGCCAGGCTCCGGGCTTACTGGGGTTGGGCAGCCCCA
GCCCGTGCAGCCTCCGCAGCAGATGGGTGGCAGTGGTCAGCTGCCAGCCGTGCCTGGTGGTCCTCACACC
GTGGTGCCCGGAGTTCCAAACGTGCCTGCAGCGGTACCCGTTCCAAGCGTGCCTAGTGTGCCCACCACTT
CTGTTACTATGCCAAATGTACCCGCGCCTCTGGGCCAGTCTCAGCAGCTGAGCAGCCATACGCCAGTCAG
CCGGAGCAGCAGCGTCATCCAGCAAGTTGGTTCACCCTTAGCTCAAGGCACACACAGTGCACCAACAAGT
CTACCACAGTCTGACCTAAGCCAGTTTCAGACTCAGACCCAGCCTTTAGTCGGGCAAGTTGACGATACTA
GAAGAAAATCAGAACCCCTACCTCAAGCACCACTTTCTCTCATTGCTGAAAGTAAGCCTGTTGTGAAGCC
TCCAGTTGCAGATGCCCTGACAAACCCTCTTCAGTTAACACCTATGAACAGTCTGGCCACCTCTGTATTC
AGCATAGCTATTCCTGTTGATGGTGATGAAGACAGGAATCCTTCAACTGCTTTCTACCAAGCGTTCCATT
TGAACACGTGTCAGGAATCAAAGAGCCTCTGGGATAGTGCATCTGGGGGCGGTGTTGTAGCCATTGACAA
CAAAATAGAACAAGCAATGGATCTGGTGAAAAGCCATTTGATGTATGCAGTAAGAGAAGAAGTGGAAGTT
CTAAAGGAGCAAATAAAAGAATTAGTGGAAAGAAACTCTTTACTTGAACGAGAAAATGCACTGTTAAAAT
CTCTTTCAAACAATGATCAGTTGTCCCAACTCCCAGCCCAACAGGCCAATCCTGGTAGCACTTCTCAACA
ACAAGCAATGATAGCACAGCCTCCTCAGCCAACGCAACCTCCACAGCAGCCGAATGTCTCCTCAGCATAA

Translation (769 aa):
MSKMPAKKKSCFQITSVTTAQVATSITEDTESLDDPDESRTEDVSSEIFDVSRATDYGPEEVCERSSSEE
TLNNVGDAETPGTVSPNLILDGQLAAASAAPANGGGGGVSARSVAGALAQTLAAAAASVSTPGPSSATPS
QPPATCSSRFRVIKLDHGSGEPYRRGRWTCMEYYERDSDSSVLTRSGDCIRHSNTLEQTAERDSGLGATG
GSVVVVVASMQGAHGLDSGTDSSLTAVSQLPPSEKMSQPTLAQPQSFSVGQPQPPPPVGGAVAPSSASLP
PFPGAATGPQPMTAAVQPTQLQGAVAGGALPGPVGQGLPPPPNVNLAQPVALAAQPGPAGGSSLSQQFAY
PQPQIPPGHLLPMQPSGQSEYLPPHVALQPPSPAQPLSTSASATSASAASFPLGSGQSVSSLGAQMMGAS
AQPSEAVAPGPVPVGQAAPCQPAGVAPAALGGVVQPGSGLTGVGQPQPVQPPQQMGGSGQLPAVPGGPHT
VVPGVPNVPAAVPVPSVPSVPTTSVTMPNVPAPLGQSQQLSSHTPVSRSSSVIQQVGSPLAQGTHSAPTS
LPQSDLSQFQTQTQPLVGQVDDTRRKSEPLPQAPLSLIAESKPVVKPPVADALTNPLQLTPMNSLATSVF
SIAIPVDGDEDRNPSTAFYQAFHLNTCQESKSLWDSASGGGVVAIDNKIEQAMDLVKSHLMYAVREEVEV
LKEQIKELVERNSLLERENALLKSLSNNDQLSQLPAQQANPGSTSQQQAMIAQPPQPTQPPQQPNVSSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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  UCSC Genome Browser
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