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Report for CCDS41069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41069.1 Public Mus musculus X Zc3h12b 23 108 98 CCDS HistoryNCBI Gene:547176Re-query CCDS DB by CCDS ID:41069.1Re-query CCDS DB by GeneID:547176See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082183.7 ENSMUSP00000080820.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082183.7Link to Ensembl Protein Viewer:ENSMUSP00000080820.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000082183Re-query CCDS DB by Protein ID:ENSMUSP00000080820
Original member Current member NCBI NM_001034907.3 NP_001030079.2 Accepted alive Link to Nucleotide Sequence:NM_001034907.3Link to Protein Sequence:NP_001030079.2Re-query CCDS DB by Nucleotide ID:NM_001034907Re-query CCDS DB by Protein ID:NP_001030079Link to BLAST:NP_001030079.2

Chromosomal Locations for CCDS 41069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 95899096 95899700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95922353 95922492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95924445 95924679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95925264 95925370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 95926550 95927970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2508 nt):
ATGACGGCCACAGCTGCAGTGGAGACACCAAAAATGGAGAAGAGTGCTTCCAAGGAAGAGAAGCAACAGC
CAAAGCAGGAGGACAGCACAGACCGAGGCAATGCTGATCCTGAAGAATGGGCGAACTCTGAGAGTGACCC
TGAGCAGATGAGCTGTAAGAGTGGCCACACCAGCTACCAAGCCACAGATATTCAACTGAAGAAGAAAGAG
ATGCCCTCTAAGCCACATCGTCCGCTCTGTCGGTCACCCTGCCTGGACCGGCCAAGCTTCTCCCAGAGCA
GCATTTTACAGGATGGGAAGCTAGACTTGGAGAAAGAATACCAAGCCAAGATGGATTTTGCTCTAAAGTT
GGGTTATGCAGAAGAGCAAATTCAATCAGTGCTTAATAAACTAGGCCCAGAATCACTTATTAATGATGTA
TTAGCAGAGCTTGTCAGACTTGGAAACAAAGGTGATTCGGAAGCACAAGTCAACTTGAGTCTATTACTGC
CCCGAGGAGCAAGCTCCAGAGAGATTGCAAGCCCTGAATTGTCTCTTGAAGATGAAATAGACAATAGTGA
TAATTTAAGACCAATTGTTATTGATGGAAGTAATGTGGCAATGAGCCATGGGAATAAAGAAGAATTCTCC
TGCAGGGGAATACAACTTGCTGTGGATTGGTTTCTAGACAAAGGCCATAAAGATATCACGGTATTTGTAC
CAGCATGGAGAAAGGAGCAATCCCGCCCCGATGCACCAATTACAGATCAAGATATTCTACGTAAACTGGA
GAAGGAAAAGATTCTCGTCTTCACACCATCGCGAAGGGTCCAAGGCAGGAGGGTGGTCTGCTATGATGAT
CGGTTCATAGTCAAATTGGCTTTCGATTCTGATGGCATCATTGTGTCCAATGATAACTACCGAGACCTTC
AAGTTGAAAAGCCAGAATGGAAGAAGTTTATAGAGGAACGGTTGCTGATGTATTCTTTTGTGAATGATAA
ATTTATGCCGCCAGATGATCCTCTTGGACGCCATGGTCCGAGCCTTGAGAATTTCTTAAGAAAGAGACCT
GTGGTTCCTGAGCATAAGAAGCAGCCATGTCCTTATGGCAAAAAATGTACCTACGGCCACAAGTGCAAAT
ACTATCATCCGGAGCGGGCCAACCAACCCCAGCGTTCGGTGGCTGATGAGCTCCGCATCAGTGCCAAACT
GTCCACAGTGAAAATAATGAGTGAAGACACCCTGGCCAAATGTGGCGCAGGGATGTCTACTGCCAAAGGT
GAGATAACCTCAGAGATAAAACGTGTGGCCTCCAAGCGCCAATCAGATCCCAGCATCCGGTCTGTGGCTG
TAGAGCCTGAGGAGTGGCTGTCCATCGCCCGTAAACCTGAGGCCAGTTCTGTCCCTTCACTTGTGACCGC
TTTAAGTGTCCCTACAATCCCTCCTCCCAAAAGCCATGCAGTGGGTGCACTCAACACCCGTTCAGCCAGC
AGCCCAGTGCCAGGGTCCTCCCATTTTCCCCATCAAAAGGCCTCTTTGGAACACATGGTCAGCATGCAAT
ATCCACCTATCCTGGTTACCAACAGCCATGGCACCCCTATTAACTATACTGAGCAATACCCAAAGTTTGA
GACCATGGGGGACCATGACTACTATTCAGTGTTAAGTGACTTCTCCAAACTGAGCATCAACAACATGCAT
AATCATGAATATTATATGGCTGAGGCAAACCAGGGGGTATATGTTCGGAATCCCGGCCTATGTACTGATA
GTCACATGAGCCATACCAGGAATGACAACTATTCCTCTTACAACAACCTGTACTTGGCTGTAGCTGATGC
CCATCCTGAAGGCACTTTGAAGCTGCACCGCTCAGCATCTCATAACCATCTTCAGCCTTTTTCCCATGGT
TACCATGAAGCCTTAGCAAGAGTTCAAAGTTATGGTTCCGAAGATTCCAAGCAAGCACCCCACAAGCAGT
CAGTCCCTCACTTAGCTGTGCATACCCAGAATCCAGCAACTGGAGCACACTCTAGCTGTCCTGGAGACTA
CACCATGCCTCCCAGTATCCATCCTGTGGGACCCTCCCAGCCAGGCCGGGCTCTGGTGATGACTCGAATG
GACAGCATTTCTGACTCCCGCCTCTATGACAGCAACCCCATGAGGCAAAGACGGCCTCCTCTGTGCAGAG
AACAGCATGCTAGCTGGGACCCATTGCCTTGTACAGCCGACTCCTATGGATACCACTCCTATCCCTTAGG
GAACAGCCTCATGCAACCGTGTTATGAACCAGTCATGGTAAGGAGCATGCCTGAAAAAATGGAGCAGCTT
TGGAGGAATCCTTGGGTTGGAATGTGCAATGATTCTAGGGAGCACATGATACCAGAGCATCAATATCAGA
CATACAAGAACCTCTGCAACATCTTCCCTTCTAACATTGTTCTTGCAGTGATGGAGAAGAATCCCCACAC
AGCAGACGCTCAACAACTGGCAGCCTTGATTGTTGCCAAGCTTAGAGCTGCACGTTGA

Translation (835 aa):
MTATAAVETPKMEKSASKEEKQQPKQEDSTDRGNADPEEWANSESDPEQMSCKSGHTSYQATDIQLKKKE
MPSKPHRPLCRSPCLDRPSFSQSSILQDGKLDLEKEYQAKMDFALKLGYAEEQIQSVLNKLGPESLINDV
LAELVRLGNKGDSEAQVNLSLLLPRGASSREIASPELSLEDEIDNSDNLRPIVIDGSNVAMSHGNKEEFS
CRGIQLAVDWFLDKGHKDITVFVPAWRKEQSRPDAPITDQDILRKLEKEKILVFTPSRRVQGRRVVCYDD
RFIVKLAFDSDGIIVSNDNYRDLQVEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRP
VVPEHKKQPCPYGKKCTYGHKCKYYHPERANQPQRSVADELRISAKLSTVKIMSEDTLAKCGAGMSTAKG
EITSEIKRVASKRQSDPSIRSVAVEPEEWLSIARKPEASSVPSLVTALSVPTIPPPKSHAVGALNTRSAS
SPVPGSSHFPHQKASLEHMVSMQYPPILVTNSHGTPINYTEQYPKFETMGDHDYYSVLSDFSKLSINNMH
NHEYYMAEANQGVYVRNPGLCTDSHMSHTRNDNYSSYNNLYLAVADAHPEGTLKLHRSASHNHLQPFSHG
YHEALARVQSYGSEDSKQAPHKQSVPHLAVHTQNPATGAHSSCPGDYTMPPSIHPVGPSQPGRALVMTRM
DSISDSRLYDSNPMRQRRPPLCREQHASWDPLPCTADSYGYHSYPLGNSLMQPCYEPVMVRSMPEKMEQL
WRNPWVGMCNDSREHMIPEHQYQTYKNLCNIFPSNIVLAVMEKNPHTADAQQLAALIVAKLRAAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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