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Report for CCDS23142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23142.1 Public Mus musculus 9 Apoa4 23 108 98 CCDS HistoryNCBI Gene:11808Re-query CCDS DB by CCDS ID:23142.1Re-query CCDS DB by GeneID:11808See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23142.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034585.6 ENSMUSP00000034585.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034585.6Link to Ensembl Protein Viewer:ENSMUSP00000034585.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034585Re-query CCDS DB by Protein ID:ENSMUSP00000034585
Original member Current member NCBI NM_007468.2 NP_031494.2 Accepted alive Link to Nucleotide Sequence:NM_007468.2Link to Protein Sequence:NP_031494.2Re-query CCDS DB by Nucleotide ID:NM_007468Re-query CCDS DB by Protein ID:NP_031494Link to BLAST:NP_031494.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031494.2 395 P06728 395 100% 0 0

Chromosomal Locations for CCDS 23142.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 46241154 46241202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46241468 46241594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46242279 46243290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGTTCCTGAAGGCTGCGGTGCTGACCCTGGCCCTGGTGGCCATCACCGGCACCCGGGCTGAGGTCACTT
CGGACCAGGTGGCCAATGTGGTGTGGGATTACTTTACCCAGCTAAGCAACAATGCCAAGGAGGCTGTAGA
ACAGTTTCAGAAGACGGATGTCACTCAGCAGCTCAGTACCCTCTTCCAGGACAAACTTGGGGATGCTAGT
ACGTATGCTGATGGGGTGCACAACAAGCTGGTGCCCTTTGTCGTACAGCTGAGTGGGCATCTAGCCCAGG
AAACTGAGAGGGTGAAGGAAGAGATCAAGAAGGAGCTGGAGGACCTACGTGACCGCATGATGCCCCATGC
CAACAAAGTAACCCAGACGTTCGGGGAGAACATGCAGAAGTTGCAGGAGCACCTGAAGCCCTATGCCGTG
GACCTGCAAGATCAGATCAACACACAGACCCAGGAAATGAAGCTCCAGCTGACCCCATACATCCAGCGCA
TGCAGACCACGATCAAGGAGAATGTGGACAACCTGCACACCTCGATGATGCCCCTTGCCACCAACTTAAA
GGACAAGTTTAACAGGAATATGGAAGAGCTCAAGGGGCACCTAACCCCCCGTGCCAACGAGCTGAAGGCC
ACGATCGACCAGAACCTGGAGGATCTGCGCCGCAGCCTGGCCCCTCTGACGGTGGGCGTGCAGGAGAAAC
TCAACCATCAGATGGAGGGCCTGGCCTTCCAGATGAAGAAGAACGCGGAGGAGCTCCAGACCAAGGTCTC
CGCAAAAATCGACCAGCTGCAGAAGAATCTGGCCCCGCTGGTGGAAGACGTGCAGAGCAAGGTGAAGGGC
AACACGGAAGGGCTGCAGAAGTCTCTGGAAGACCTGAACAGGCAGCTGGAGCAGCAGGTGGAGGAGTTCC
GACGCACTGTGGAGCCCATGGGAGAGATGTTCAACAAGGCTCTGGTGCAGCAGCTGGAACAGTTCAGACA
GCAGCTGGGTCCCAATTCGGGGGAGGTGGAAAGCCACTTGAGCTTCCTGGAGAAGAGCCTGAGGGAGAAG
GTCAACTCCTTTATGAGCACCCTGGAAAAAAAGGGGAGCCCAGACCAGCCTCAAGCCCTCCCCCTCCCGG
AGCAGGCCCAGGAGCAGGCTCAGGAGCAGGCTCAGGAGCAGGTGCAGCCCAAACCTCTGGAGAGCTGA

Translation (395 aa):
MFLKAAVLTLALVAITGTRAEVTSDQVANVVWDYFTQLSNNAKEAVEQFQKTDVTQQLSTLFQDKLGDAS
TYADGVHNKLVPFVVQLSGHLAQETERVKEEIKKELEDLRDRMMPHANKVTQTFGENMQKLQEHLKPYAV
DLQDQINTQTQEMKLQLTPYIQRMQTTIKENVDNLHTSMMPLATNLKDKFNRNMEELKGHLTPRANELKA
TIDQNLEDLRRSLAPLTVGVQEKLNHQMEGLAFQMKKNAEELQTKVSAKIDQLQKNLAPLVEDVQSKVKG
NTEGLQKSLEDLNRQLEQQVEEFRRTVEPMGEMFNKALVQQLEQFRQQLGPNSGEVESHLSFLEKSLREK
VNSFMSTLEKKGSPDQPQALPLPEQAQEQAQEQAQEQVQPKPLES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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