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Report for CCDS40838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40838.1 Public Mus musculus X Akap4 23 108 98 CCDS HistoryNCBI Gene:11643Re-query CCDS DB by CCDS ID:40838.1Re-query CCDS DB by GeneID:11643See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40838.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057101.12 ENSMUSP00000050962.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057101.12Link to Ensembl Protein Viewer:ENSMUSP00000050962.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000057101Re-query CCDS DB by Protein ID:ENSMUSP00000050962
Original member Current member NCBI NM_009651.4 NP_033781.2 Accepted alive Link to Nucleotide Sequence:NM_009651.4Link to Protein Sequence:NP_033781.2Re-query CCDS DB by Nucleotide ID:NM_009651Re-query CCDS DB by Protein ID:NP_033781Link to BLAST:NP_033781.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033781.2 849 Q60662-1 849 100% 0 0

Chromosomal Locations for CCDS 40838.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7067630 7067656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7070431 7070526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7073149 7073199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7073635 7073736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7075709 7077826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7078264 7078419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2550 nt):
ATGATTGCCTACTGTGGTACTACAACGATGTCTGACGATATTGACTGGTTACACAGCCGCAGAGGCGTGT
GCAAGGTAGATCTTTACAGTCCAAAAGGACAACAAGATCAGGACCGAAAAGTGATATGCTTTGTGGATGT
GTCTACCTTGAATGTGGAAGATAAAGATTCCAAGGGTGCTGCTGGTTCCAGGTCAGAAGGCGAGTTAAAT
CTGGAGACTCTGGAAGAAAAAGAGATTATCGTAATCAAGGACACTGAAAAACAAGACCAGTCTAAGACGG
AGGGATCTGTGTGCCTTTTCAAACAAGCTCCCTCTGATCCTATAAGTGTCCTCAACTGGCTCCTCAATGA
TCTCCAGAAGTATGCCTTGGGTTTCCAACATGCATTAAGCCCCTCAGCCTCTAGCTGTAAACATAAAGTG
GGAGACCTAGAGGGTGACTATAGCAAAATACCATCTGAGAACTGCTACAGTGTGTACGCTGATCAAGTAA
ACTTTGATTATTTGAACAAAGGACCTCAAAACCTTCGCCTAGAAATGGCGGCATCCAAAAACACCAACAA
TAACCAAAGTCCCTCAAATCCTGCAACCAAATCTCCTAGCAATCAGAGGTCAGTTGCCACTCCTGAGGGA
GAATGTTCTATGGACGACCTTTCCTTCTATGTCAACCGATTGTCATCTCTGGTAATCCAAATGGCCCGTA
AGGAAATCAAGGACAAATTGGAAGGTGGAAGCAAATGTCTCCATCATTCCATGTATACATCAGGAGATAA
AGGGAAAACCAGCCCCCGGAGTGCTGTCAGCAAAATTGCTTCGGAGATGGCCCATGAAGCTGTTGAACTG
ACCTCATCAGAAATGCGTGGCAATGGAGAGGATTGCAGGGATGGCCGGAAAACCTTTTTGTATAGTGAAA
TGTGTAACAAGAACAAGTGTGGCGAAAAGCAGCAGATGTGCCCAAAAGACAGCAAAGAATTTGCGGATTC
CATCAGCAAGGGGCTTATGGTTTATGCAAATCAAGTAGCATCTGACATGATGGTCTCTGTTATGAAAACT
TTGAAAGTACACAGCTGTGGGAAGCCAATTCCGGCTTGTGTGGTCCTGAAGAGGGTACTATTGAAGCACA
CCAAGGAAATTGTATCTGATCTGATTGATTCATGTATGAAAAACTTGCATAACATAACAGGAGTCCTGAT
GACAGACTCAGACTTCGTTTCTGCTGTCAAGAGGAATCTTTTCAATCATGGTAAACAAAATGCAGCGGAC
ATCATGGAGGCCATGCTAAAGCGTCTGGTCAGTGCTCTTCTTGGTGAGAAGAAGGAGACTAAGTCTCAAA
GTCTGGCCTATGCAACCTTAAAAGCTGGAACTAATGATCCGAAATGCAAGAATCAGAGCCTTGAGTTCTC
AGCTATGAAAGCTGAAATGAAAGGAAAAGATAAATGCAAATCCAAAGCAGATCCATGCTGCAAATCGTTG
ACAAGTGCTGAGAGAGTCAGCGAGCATATCCTCAAAGAGAGCCTTACTATGTGGAACAACCAGAAGCAAG
GAAACCAAGGCAAAGTGACTAACAAAGTTTGCTGCACCAGTAAAGATGAGAAGAGAGAAAAGATCAGTCC
TTCCACAGATTCACTGGCCAAGGATCTAATTGTCTCTGCCCTTATGCTCATTCAATACCATCTGACCCAA
CAAGCCAAGGGCAAAGATCCATGTGAAGAGGAGTGCCCTGGTTCCTCCATGGGGTATATGTCCCAAAGTG
CACAATACGAAAAATGTGGAGGTGGCCAAAGTTCTAAATCACTTTCAATGAAGCATTTTGAAACTCGTGG
AGCTCCTGGACCATCTACATGTATGAAGGAAAATCAACTGGAGTCCCAGAAGATGGATATGTCAAACATG
GTTCTGTCCCTGATTCAGAAACTCCTGAGTGAGAGCCCTTTCAGTTGCGATGAACTAACTGAAAGTGACA
ATAAGCGTTGTTGTGATCCTAGATCAAGCAAAGCAGCTCCCATGGCCAAGAGACCTGAAGAGCAATGCCA
AGACAATGCAGAACTAGACTTCATCAGTGGGATGAAGCAAATGAACCGCCAGTTTATAGATCAGCTGGTA
GAATCCGTGATGAAACTCTGCCTGATCATGGCTAAGTACAGCAACAATGGAGCAGCCCTGGCTGAGCTGG
AAGAACAAGCAGCCCTGGTAGGCAGTGGCTCCAGATGTGGCCGTGATGCTATGATGTCACAAAATTATTC
TGAAACTCCTGGCCCTGAAGTTATTGTCAACAATCAGTGCTCTACAACTAACTTGCAGAAGCAGCTGCAG
GCTGTCCTGCAATGGATTGCAGCCTCTCAATTCAATGTGCCCATGCTCTACTTCATGGGAGACGATGATG
GACAACTAGAGAAGCTCCCTGAAGTTTCAGCTAAGGCTGCAGAGAAGGGGTACAGTGTAGGAGATCTTCT
TCAGGAGGTCATGAAGTTTGCCAAAGAACGACAACTGGATGAAGCCGTGGGCAACATGGCTAGAAAGCAG
CTGCTAGACTGGCTTCTCGCTAACCTGTAA

Translation (849 aa):
MIAYCGTTTMSDDIDWLHSRRGVCKVDLYSPKGQQDQDRKVICFVDVSTLNVEDKDSKGAAGSRSEGELN
LETLEEKEIIVIKDTEKQDQSKTEGSVCLFKQAPSDPISVLNWLLNDLQKYALGFQHALSPSASSCKHKV
GDLEGDYSKIPSENCYSVYADQVNFDYLNKGPQNLRLEMAASKNTNNNQSPSNPATKSPSNQRSVATPEG
ECSMDDLSFYVNRLSSLVIQMARKEIKDKLEGGSKCLHHSMYTSGDKGKTSPRSAVSKIASEMAHEAVEL
TSSEMRGNGEDCRDGRKTFLYSEMCNKNKCGEKQQMCPKDSKEFADSISKGLMVYANQVASDMMVSVMKT
LKVHSCGKPIPACVVLKRVLLKHTKEIVSDLIDSCMKNLHNITGVLMTDSDFVSAVKRNLFNHGKQNAAD
IMEAMLKRLVSALLGEKKETKSQSLAYATLKAGTNDPKCKNQSLEFSAMKAEMKGKDKCKSKADPCCKSL
TSAERVSEHILKESLTMWNNQKQGNQGKVTNKVCCTSKDEKREKISPSTDSLAKDLIVSALMLIQYHLTQ
QAKGKDPCEEECPGSSMGYMSQSAQYEKCGGGQSSKSLSMKHFETRGAPGPSTCMKENQLESQKMDMSNM
VLSLIQKLLSESPFSCDELTESDNKRCCDPRSSKAAPMAKRPEEQCQDNAELDFISGMKQMNRQFIDQLV
ESVMKLCLIMAKYSNNGAALAELEEQAALVGSGSRCGRDAMMSQNYSETPGPEVIVNNQCSTTNLQKQLQ
AVLQWIAASQFNVPMLYFMGDDDGQLEKLPEVSAKAAEKGYSVGDLLQEVMKFAKERQLDEAVGNMARKQ
LLDWLLANL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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