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Report for CCDS35859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35859.1 Public Mus musculus 10 Pde7b 23 108 98 CCDS HistoryNCBI Gene:29863Re-query CCDS DB by CCDS ID:35859.1Re-query CCDS DB by GeneID:29863See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35859.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020165.13 ENSMUSP00000020165.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020165.13Link to Ensembl Protein Viewer:ENSMUSP00000020165.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020165Re-query CCDS DB by Protein ID:ENSMUSP00000020165
Original member Current member NCBI NM_013875.6 NP_038903.3 Accepted alive Link to Nucleotide Sequence:NM_013875.6Link to Protein Sequence:NP_038903.3Re-query CCDS DB by Nucleotide ID:NM_013875Re-query CCDS DB by Protein ID:NP_038903Link to BLAST:NP_038903.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038903.3 446 Q9QXQ1 446 100% 0 0

Chromosomal Locations for CCDS 35859.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 20400418 20400632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20407128 20407208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20410343 20410439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20412996 20413140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20418732 20418823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20434465 20434596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20436196 20436296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20438725 20438820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20440765 20440828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20443218 20443369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20479675 20479758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20619130 20619190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20724676 20724696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGTCTTGTTTAATGGTTGAGAGGTGTGGCGAAGTCTTGTTTGAGAGCCCTGAACAGAGTGTCAAATGTG
TTTGCATGCTAGGAGATGTACGACTAAGGGGTCAGACGGGGGTTCCTGCCGAACGCCGTGGCTCCTACCC
ATTCATTGACTTCCGTCTACTTAACAATACAACACACTCAGGGGAAATTGGCACCAAGAAAAAGGTGAAA
CGACTGTTAAGTTTCCAAAGATACTTCCATGCATCTAGGCTTCTCCGGGGGATTATACCGCAGGCCCCTC
TCCACCTGCTGGATGAAGACTACCTTGGACAAGCAAGGCACATGCTCTCCAAAGTTGGAACGTGGGACTT
TGACATTTTCTTGTTTGATCGCTTGACAAATGGGAACAGTCTGGTAACTCTGTTGTGTCACCTCTTCAAC
TCCCATGGGCTCATCCACCATTTCAAGCTCGATATGGTGACCTTGCACAGGTTTCTGGTTATGGTTCAGG
AAGATTACCACGGTCACAACCCATACCACAATGCTGTTCACGCAGCCGACGTCACCCAGGCCATGCACTG
TTACCTGAAGGAGCCAAAGTTGGCAAGCTTCCTCACACCTCTGGACATCATGCTTGGACTACTGGCTGCA
GCAGCTCATGACGTGGACCACCCAGGGGTCAACCAGCCATTTTTGATCAAAACTAACCACCATCTTGCCA
ACCTGTATCAGAATATGTCTGTACTGGAGAATCACCACTGGCGATCTACAATTGGCATGCTTCGAGAATC
ACGGCTCCTGGCTCACTTGCCAAAGGAAATGACACAGGATATCGAACAGCAGCTGGGCTCCCTCATCTTG
GCCACGGATATCAACAGACAGAATGAGTTTCTGACCCGCTTAAAAGCTCACCTCCACAATAAAGATTTGA
GACTGGAGAATGTACAGGACAGACACTTTATGCTTCAGATCGCCTTGAAGTGTGCTGACATTTGCAATCC
TTGTCGTATCTGGGAGATGAGCAAGCAGTGGAGTGAAAGGGTCTGTGAGGAATTCTACAGACAAGGTGAC
CTTGAACAGAAGTTTGAACTGGAAATCAGTCCTCTTTGTAATCAACAGAAAGATTCAATCCCTAGCATAC
AAATTGGTTTCATGACTTACATCGTGGAGCCGCTGTTCCGGGAGTGGGCCCGGTTTACTGGGAACAGCAC
CCTGTCGGAGAACATGCTAAGCCATCTCGCGCACAACAAAGCCCAGTGGAAGAGCCTGCTGTCCAATCAG
CACAGACGCAGGGGCAGCGGCCAGGACCTGGCGGGCCCCGCACCTGAGACCCTGGAGCAGACAGAAGGTG
CCACGCCCTAA

Translation (446 aa):
MSCLMVERCGEVLFESPEQSVKCVCMLGDVRLRGQTGVPAERRGSYPFIDFRLLNNTTHSGEIGTKKKVK
RLLSFQRYFHASRLLRGIIPQAPLHLLDEDYLGQARHMLSKVGTWDFDIFLFDRLTNGNSLVTLLCHLFN
SHGLIHHFKLDMVTLHRFLVMVQEDYHGHNPYHNAVHAADVTQAMHCYLKEPKLASFLTPLDIMLGLLAA
AAHDVDHPGVNQPFLIKTNHHLANLYQNMSVLENHHWRSTIGMLRESRLLAHLPKEMTQDIEQQLGSLIL
ATDINRQNEFLTRLKAHLHNKDLRLENVQDRHFMLQIALKCADICNPCRIWEMSKQWSERVCEEFYRQGD
LEQKFELEISPLCNQQKDSIPSIQIGFMTYIVEPLFREWARFTGNSTLSENMLSHLAHNKAQWKSLLSNQ
HRRRGSGQDLAGPAPETLEQTEGATP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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