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Report for CCDS84933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84933.1 Public Mus musculus 5 2900026A02Rik 23 108 98 CCDS HistoryNCBI Gene:243219Re-query CCDS DB by CCDS ID:84933.1Re-query CCDS DB by GeneID:243219See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212276.1 ENSMUSP00000148442.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212276.1Link to Ensembl Protein Viewer:ENSMUSP00000148442.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212276Re-query CCDS DB by Protein ID:ENSMUSP00000148442
Original member Current member NCBI NM_001347397.1 NP_001334326.1 Accepted alive Link to Nucleotide Sequence:NM_001347397.1Link to Protein Sequence:NP_001334326.1Re-query CCDS DB by Nucleotide ID:NM_001347397Re-query CCDS DB by Protein ID:NP_001334326Link to BLAST:NP_001334326.1

Chromosomal Locations for CCDS 84933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113092419 113092497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113093102 113093244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113093966 113094084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113095590 113095764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113097598 113097838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113101459 113101577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113137705 113137986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGAGTACCTGGGCGACAAGCTTTCAGTGGCCCAGACACACATGACTCAGTGGGTTGGCACGGTGAGGC
GGTCCTTCCAGGAGGCTCTGCACTTGGTGACGGCCACGGTGGGCACCGAGCGGAGCGGGGAGTCCGCCGC
TCGCACCCCGTTCAAGCGCACCTCCTCCTTCAGACACCTGGCCTCTCGGAGCCGAGAGTCCTTCCGCCGC
TTCTCCGCACGCAGCCAACAGAGGTTCTCATCCCTCCGGAAGAGACAGCCAGACTCTGAGGCCCCTGATC
TTAACCAGCTGAAGCAGTGTTTCTCCAGGCGAGCCCCTGAGGCCAAGGATACTGACACCCTCGTGCAGGA
AGCCGACAGCCAGTATGGGACCTGGGCAGACCAGCACCAGAACGGGGGCAGTTTTGGCCCCGAGTCTCCG
TCTCCTGACAGCAGCGCAGCGTCCGTGGGAAAGCAGCCCCCTGGCAGTCACTTGTCCTCATATACCGAGT
CCACGTCGGTGGAGCAGCGTGACAGCTCCAGGGACCGGCGCAGCTCCAGCGTGGACCGCTCCAGTTCCGA
GCTGGAGTCCACAGATGGCCCAGAGGGACCGCCTCCATCAGACGTCTGCCCTGCCCAGGAAGATGATTTC
TCCTTCATCCATCAAACCTCAGTCCTCGACTCCAGTGCCCTCAAGACCCGGGTGCAGCTGAGTAAGCGAA
GCCGTCGCAGGGCACCCATCTCCCACTCGCTCCGGCGCAGCCAGTTCAGCGAGTCTGAGAGCCGATCCCC
TCTGGAGGAGGAGTCACACAGCACGTGGATGTTCAAGGACTCCACAGAGGAGAAGTCGCCCAGGAGGGAT
GAATCAGATGAAGAGCCGCCCCGGGTGGAGAGGACCCCTGTCAGCCACCCGCAGAGGATGCCCGTGTTCC
CAGGCATGGACCCCGCTGTGCTGAAGGCTCAGCTGCCCAAGAGGTCAGAAGTGGACAGTCCTGGAGACTC
TCTCAGCTGGACACCCCAGCCCAAGAGTCCTAAGTCGCCCTTCCATCCCGGGGTGCTGGGTAGTCGGGTG
CTGCCTCCCAGCACAGAGAAAGAGGAGAGGTCAGAGGAGTGCTCGCCCCAGTGGCTAAAAGAGCTGAAGT
CCAAGAAGAGGCAGAGCCTGTATGAGAATCAAGCCTGA

Translation (385 aa):
MEYLGDKLSVAQTHMTQWVGTVRRSFQEALHLVTATVGTERSGESAARTPFKRTSSFRHLASRSRESFRR
FSARSQQRFSSLRKRQPDSEAPDLNQLKQCFSRRAPEAKDTDTLVQEADSQYGTWADQHQNGGSFGPESP
SPDSSAASVGKQPPGSHLSSYTESTSVEQRDSSRDRRSSSVDRSSSELESTDGPEGPPPSDVCPAQEDDF
SFIHQTSVLDSSALKTRVQLSKRSRRRAPISHSLRRSQFSESESRSPLEEESHSTWMFKDSTEEKSPRRD
ESDEEPPRVERTPVSHPQRMPVFPGMDPAVLKAQLPKRSEVDSPGDSLSWTPQPKSPKSPFHPGVLGSRV
LPPSTEKEERSEECSPQWLKELKSKKRQSLYENQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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