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Report for CCDS27882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27882.1 Public Mus musculus 15 Amhr2 23 108 98 CCDS HistoryNCBI Gene:110542Re-query CCDS DB by CCDS ID:27882.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023809.10 ENSMUSP00000023809.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023809.10Link to Ensembl Protein Viewer:ENSMUSP00000023809.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023809Re-query CCDS DB by Protein ID:ENSMUSP00000023809
Original member Current member NCBI NM_001356575.1 NP_001343504.1 Accepted alive Link to Nucleotide Sequence:NM_001356575.1Link to Protein Sequence:NP_001343504.1Re-query CCDS DB by Nucleotide ID:NM_001356575Re-query CCDS DB by Protein ID:NP_001343504Link to BLAST:NP_001343504.1
Original member Current member NCBI NM_144547.2 NP_653130.2 Accepted alive Link to Nucleotide Sequence:NM_144547.2Link to Protein Sequence:NP_653130.2Re-query CCDS DB by Nucleotide ID:NM_144547Re-query CCDS DB by Protein ID:NP_653130Link to BLAST:NP_653130.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343504.1 568 Q8K592 568 100% 0 0
NP_653130.2 568 Q8K592 568 100% 0 0

Chromosomal Locations for CCDS 27882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102445474 102445522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102445805 102445987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102446264 102446455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102446708 102446779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102447000 102447112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102447231 102447461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102452149 102452263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102452387 102452559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102452745 102452892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102453032 102453168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102454213 102454506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGCTGGGGACACTGGGGCTTTGGACACTGCTTCCTGCGGCAGCACAAGTATCCCCAAACAGGAGGACCT
GTGTGTTCTTTGAGGCTCCTGGAGTGCGGGGAAGCACAAAGACACTGGGGGAAATGGTAGATGCAGGACC
AGGCCCCCCCAAGGGTATCCGCTGCCTCTACAGCCATTGCTGCTTTGGGATCTGGAATCTTACCCATGGC
CGGGCACAAGTGGAGATGCAAGGATGCCGAGACAGTGATGAGCCAGGCTGTGAGTCCCTCCACTGTGACC
CAGTCCCCAGAGCCCACCCGAACCCCAGCTCCACACTCTTCACGTGTTCCTGTGGCACTGACTTCTGCAA
TGCCAATTACAGCCATCTGCCTCCTTCGGGAAACCAAGGGGCTCCTGGCCCCCAGGAGCCCCAGGCTACC
CCAGGTGGGCCCGTCTGGATGGCACTGCTGCTCCTGGGAATGTTTCTCGTGTTGTTGCTGAGTAGCATCA
TCTTGGCCCTGCTACAACGAAAGGCCTGCAGAGTGCAAGGTGGGTCAGACCCAGAGCCCGGCTCAGGCGG
AGACTGCAGTGAGGAACTGCCAGAGCTGGCCGAGCTGCGTTTCTCCCAGGTAATCCAGGAAGGAGGTCAT
GCAGTCGTCTGGGCCGGGAGGCTTCAGGGTGAGATGGTAGCCATCAAGGCCTTCCCCCCAAGGGCTGTGG
CCCAGTTCCGAGCTGAGAGGGCTGTGTACCAGCTGCTAGGCCTACAGCATGACCATATCGTTCGCTTTAT
CACTGCTGGCCAGGGAGGCCCTGGCCCTCTGCCCTCTGGGCCTTTGCTGGTACTGGAACTGTACCCTAAG
GGCTCCTTATGCCACTACTTGACTCAGTACACGAGCGACTGGGGAAGTTCCTTGAGGATGGCTCTGTCCC
TGGCAGAGGGCTTGGCTTTTCTCCACGAGGAGCGTTGGCAGGATGGCCAGTACAAACCAGGTATCGCCCA
CCGAGACCTGAGCAGCCAGAATGTGCTCATTCGGGAAGATAGGTCATGCGCCATCGGGGACCTGGGCCTT
GCCTTGGTACTCCCTGGTCTTGCTCAGCCCCCTGCCTTGGCCCCTACTCAACCCCGAGGCCCCGCTGCCA
TTTTGGAGGCTGGCACCCAGCGGTACATGGCTCCAGAGCTCTTGGACAAGACTCTAGACTTGCAGGACTG
GGGTACAGCTCTCCAGAGAGCGGATGTTTACTCTCTGGCGCTACTACTGTGGGAGATCCTGAGCCGCTGT
TCCGATTTGAGGCCTGACCACAGACCACCACCTTTCCAATTGGCTTATGAGGCAGAACTGGGCAGCAATC
CCAGTGCCTGTGAGCTCTGGGCCCTGGCAGTGGAGGAGAGGAAGCGCCCCAACATCCCATCCACTTGGAG
CTGCTCTGCCACAGACCCTCGGGGGCTGAGGGAGCTCCTGGAAGATTGCTGGGACGCAGACCCAGAAGCA
CGGCTGACAGCTGAGTGTGTGCAGCAGCGCCTGGCAGCCCTGGCTTACCCTCACGGGGCGTCCTCTTTCC
CAGAGAGTCCACAGGGCTGCCCAGAGAACTGCCTTTCAGCTCCCGCCTCTGCCGTTTTCCCCTGTCGGCC
TCAGCAGAGTTCTTGTCTCCTCAGTGTTCAGCAAGGCCCTGGCTCTAGGAGTCCCGATCCTGTAGGCGAC
ACTGTTCAGGTGTATGTAAATGAGTAG

Translation (568 aa):
MLGTLGLWTLLPAAAQVSPNRRTCVFFEAPGVRGSTKTLGEMVDAGPGPPKGIRCLYSHCCFGIWNLTHG
RAQVEMQGCRDSDEPGCESLHCDPVPRAHPNPSSTLFTCSCGTDFCNANYSHLPPSGNQGAPGPQEPQAT
PGGPVWMALLLLGMFLVLLLSSIILALLQRKACRVQGGSDPEPGSGGDCSEELPELAELRFSQVIQEGGH
AVVWAGRLQGEMVAIKAFPPRAVAQFRAERAVYQLLGLQHDHIVRFITAGQGGPGPLPSGPLLVLELYPK
GSLCHYLTQYTSDWGSSLRMALSLAEGLAFLHEERWQDGQYKPGIAHRDLSSQNVLIREDRSCAIGDLGL
ALVLPGLAQPPALAPTQPRGPAAILEAGTQRYMAPELLDKTLDLQDWGTALQRADVYSLALLLWEILSRC
SDLRPDHRPPPFQLAYEAELGSNPSACELWALAVEERKRPNIPSTWSCSATDPRGLRELLEDCWDADPEA
RLTAECVQQRLAALAYPHGASSFPESPQGCPENCLSAPASAVFPCRPQQSSCLLSVQQGPGSRSPDPVGD
TVQVYVNE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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