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Report for CCDS83986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83986.1 Public Mus musculus 12 Acot5 23 108 98 CCDS HistoryNCBI Gene:217698Re-query CCDS DB by CCDS ID:83986.1Re-query CCDS DB by GeneID:217698See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83986.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072505.4 ENSMUSP00000072322.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072505.4Link to Ensembl Protein Viewer:ENSMUSP00000072322.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000072505Re-query CCDS DB by Protein ID:ENSMUSP00000072322
Original member Current member NCBI NM_001347417.1 NP_001334346.1 Accepted alive Link to Nucleotide Sequence:NM_001347417.1Link to Protein Sequence:NP_001334346.1Re-query CCDS DB by Nucleotide ID:NM_001347417Re-query CCDS DB by Protein ID:NP_001334346Link to BLAST:NP_001334346.1

Chromosomal Locations for CCDS 83986.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84069467 84069923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84073330 84073532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84075304 84075492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84075611 84075757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGTGCCAACAGTAAGCCTGGAGCCCACGGGCCACAGCTGCTGGGACGAACCGCTGAGCATCGCTGTGC
GCGGCTTGGCCCCGGAGCAGCCCGTCACACTGCGCACTGCCCTGCGCGACGAGAAGGGCGCGCTCTTCCG
AGCCCACGCGCGCTACCGCGCGGACTCCCACGGCGAGCTGGACCTGGCGCGCACGCCCGCGCTGGGCGGC
AGCTTCTCGGGGCTCGAGCCCATGGGGCTGCTCTGGGCCATGGAGCCCGATCGGCCTTTCTGGCGCCTGA
TCAAGCGCGACGTGCAGACGCCCTTCGTGGTGGAGCTGGAGGTGCTGGACGGACACGAGCCCGACGGCGG
GCGGCTGCTGGCGCGGGCGGTGCACGAGCGTCACTTCATGGCTCCCGGGGTGCGGCGCGTGCCCGTGCGC
GAGGGCCGGGTGCGCGCCACGCTCTTTCTGCCCCCAGGAACTGGACCCTTTCCTGGGATCATAGACCTTT
TTGGAGTTGGAGGTGGCCTTCTGGAGTATCGGGCGAGCCTGCTGGCTGGGAAGGGCTTTGCCGTCATGGC
TCTGGCTTATTATAAATATGATGACCTCCCTAAGGTTATAGACATCCTTCATCTGGAGTACTTTGAGGAA
GCTGTGACCTACCTGCTCAGTCACCCTCAGGTCAAGGGTCCAGGAGTTGGCCTGCTAGGGATTTCCAAAG
GGGCTGAACTCTCCCTCTCCATGGCTTCTTTCCTGAAAGGCATCACGGCCGCTGTCGTAATCAATGGCGC
CACGGTCAACGTTATTTCAACATTATACTACAAGGAAGAGAGTCTGCCTGGTTTGGGCATGCACCTAGAA
AGGATCAAGGTCAGGACGACCACAACTGGAAGAGCGAGTTCTATGCCAGAGAGGCCTCCAAACGCCTGCA
GGCGCACGGGAAGGAGAAGCCCCAGATTGTCTGCTACCCCAAAACAGGACACCACATTGAACCCCCTTAC
ATCCCTTGGTCCATAG

Translation (331 aa):
MVPTVSLEPTGHSCWDEPLSIAVRGLAPEQPVTLRTALRDEKGALFRAHARYRADSHGELDLARTPALGG
SFSGLEPMGLLWAMEPDRPFWRLIKRDVQTPFVVELEVLDGHEPDGGRLLARAVHERHFMAPGVRRVPVR
EGRVRATLFLPPGTGPFPGIIDLFGVGGGLLEYRASLLAGKGFAVMALAYYKYDDLPKVIDILHLEYFEE
AVTYLLSHPQVKGPGVGLLGISKGAELSLSMASFLKGITAAVVINGATVNVISTLYYKEESLPGLGMHLE
RIKVRTTTTGRASSMPERPPNACRRTGRRSPRLSATPKQDTTLNPLTSLGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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