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Report for CCDS15333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15333.1 Public Mus musculus 1 Lhx9 23 108 98 CCDS HistoryNCBI Gene:16876Re-query CCDS DB by CCDS ID:15333.1Re-query CCDS DB by GeneID:16876See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093486.9 ENSMUSP00000091198.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093486.9Link to Ensembl Protein Viewer:ENSMUSP00000091198.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093486Re-query CCDS DB by Protein ID:ENSMUSP00000091198
Original member Current member EBI ENSMUST00000112030.8 ENSMUSP00000107661.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112030.8Link to Ensembl Protein Viewer:ENSMUSP00000107661.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112030Re-query CCDS DB by Protein ID:ENSMUSP00000107661
Original member Current member NCBI NM_010714.3 NP_034844.1 Accepted alive Link to Nucleotide Sequence:NM_010714.3Link to Protein Sequence:NP_034844.1Re-query CCDS DB by Nucleotide ID:NM_010714Re-query CCDS DB by Protein ID:NP_034844Link to BLAST:NP_034844.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034844.1 321 Q9WUH2-2 321 100% 0 0

Chromosomal Locations for CCDS 15333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 138828654 138828710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138832702 138832904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138838343 138838698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138839873 138840075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138841808 138841926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138847176 138847203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGCTGAACGGCACCACTCTAGAGGCAGCCATGCTCTTCCACGGAATCTCCGGAGGCCACATCCAAGGTA
TCATGGAGGAGATGGAGCGCAGATCCAAGACTGAGGCCCGTCTGACCAAAGGCACTCAGCTCAACGGCCG
CGACGCGGGTATGCCCCCTCTCAGCCCGGAGAAGCCTGCTCTGTGCGCCGGCTGCGGGGGCAAGATCTCC
GACAGGTACTATCTGCTGGCCGTAGACAAACAGTGGCATCTTAGGTGCCTGAAGTGCTGTGAATGTAAGC
TGGCTCTGGAATCTGAGCTCACCTGCTTTGCCAAGGACGGTAGCATTTACTGCAAGGAGGATTATTACAG
AAGGTTCTCTGTGCAGAGATGTGCCCGCTGCCACCTTGGCATTTCCGCCTCTGAGATGGTCATGCGCGCC
CGAGACTCTGTCTACCATCTGAGCTGCTTCACTTGTTCCACTTGCAACAAGACCTTGACCACGGGCGACC
ATTTCGGGATGAAGGACAGCCTGGTGTACTGCCGCGCACACTTCGAGACCCTCTTGCAAGGGGAATATCC
ACCTCAGCTGAGCTACACGGAGCTGGCGGCCAAGAGCGGCGGCTTGGCTTTGCCTTACTTCAATGGCACT
GGCACCGTGCAGAAGGGGCGGCCCCGGAAGCGGAAGAGCCCAGCTCTGGGAGTGGACATCGTGAATTACA
ACTCAGGTTGTAATGAGAACGAGGCAGACCACTTGGACCGGGACCAGCAGCCTTATCCACCTTCACAGAA
GACCAAACGGATGCGAACTTCTTTCAAGCATCACCAGCTCCGGACCATGAAATCCTACTTTGCTATCAAC
CATAACCCAGATGCCAAGGACCTCAAACAGCTTGCTCAAAAAACAGGCCTGACCAAAAGAGTTTTACAGG
GAGAACAAATCTTGGGGCATTACAGCCAAACATCCCGACGTTTGAAAATTCCCTAA

Translation (321 aa):
MLNGTTLEAAMLFHGISGGHIQGIMEEMERRSKTEARLTKGTQLNGRDAGMPPLSPEKPALCAGCGGKIS
DRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRA
RDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGT
GTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAIN
HNPDAKDLKQLAQKTGLTKRVLQGEQILGHYSQTSRRLKIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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