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Report for CCDS40407.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40407.1 Public Mus musculus 8 Cc2d1a 23 108 98 CCDS HistoryNCBI Gene:212139Re-query CCDS DB by CCDS ID:40407.1Re-query CCDS DB by GeneID:212139See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40407.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040383.8 ENSMUSP00000046449.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040383.8Link to Ensembl Protein Viewer:ENSMUSP00000046449.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040383Re-query CCDS DB by Protein ID:ENSMUSP00000046449
Original member Current member NCBI NM_145970.2 NP_666082.2 Accepted alive Link to Nucleotide Sequence:NM_145970.2Link to Protein Sequence:NP_666082.2Re-query CCDS DB by Nucleotide ID:NM_145970Re-query CCDS DB by Protein ID:NP_666082Link to BLAST:NP_666082.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666082.2 943 Q8K1A6 943 100% 0 0

Chromosomal Locations for CCDS 40407.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84133237 84133257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84133332 84133379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84133464 84133540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84133764 84133890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84133977 84134040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84134476 84134537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84134622 84134759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84134897 84134987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84135062 84135161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84135605 84135656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84135758 84135816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84135887 84135960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84136739 84136855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84136930 84136988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84137070 84137192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84138461 84138633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84138718 84138829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84139290 84139423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84140241 84140313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84140384 84140514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84140606 84140677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84140763 84140835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84141081 84141199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84143287 84143509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84143608 84143742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84143958 84144023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84144109 84144221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84146314 84146449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84147647 84147706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2832 nt):
ATGCACAAGAGGAATGGACCCCAGGCACCCCCGGGCCGAGGTGCTGTCACTGCCCGCCAGCTTGGTCTGC
TGGTTGACTTCTCCCCAGACGGCCTGATGATCCCCGAGGATGGGATTAATGAGGAGGAGCTGGAGGCTGA
ATTCCTGGCTTTGGTGGGGGGTCAGCCCCAGGCCCTAGAGAAACTGAAAGGCCAAGGTCCCCTGCCAATG
GAAGCCATTGAGAAGATGGCCCGGCTCTGCATGAGAGACCTGGATGAGGACGAGGAGGGGACAGACGAGG
ATGATGTGGAGGCTGATGAGGACCTGCTGGCAGAGCTAAATGAGGTCCTTGGAGAAGAACAGAAGGCTGT
GGAGCCCCTGATGCCTGTGGCCCAGCCGAAGCCTTCAGGCCCCAATCCAGGAGTAGAGGCCACGCTGCAG
GAGAGGCTAACCCTCTACCAGTCTGCACTGGAGAGTGCCAGGCAAGCTGGGGACAGTGCCAAGATGCGAC
GCTATGACCGGGGGCTCAAGACGCTGGAAAACCTGCTGGTCTCTGCAAAGAAGGGCAACATCATCAATGA
AGCAGACATTCCACCACCTGTGGCATCGGGGAAGGGAGCAGCAGCTGGGCACAGCCACACCCAAGCTACT
TCCCAGTTGGCTTCTGTAAGCCCGCCAGCCCCAGAGTCCAGCGGCACCTTGGAGGCCCCATCTACCACTA
CACCCACCTCTGCTAAGCCCCAGCTACCCCCAGATCCCTGCAGCCCCCTAGCCCGGTTGCAGAGCCTCCA
GCACGAGTACAAACTGGCTGCCCTTCGTGCCAAGCATCAGGATGACACTGCTACAGCCACCAGACACTTG
AGAATAGCTAAGAGCTTTGACCCTGTCTTGGAGGCCCTGAGCCGTGGGGAACTGGTGGACCTGTCCCGCC
TGCCCCCTCCCCCTGACCAGCTGTCCCCAGAGCCCCCCTTGCCAGCTGCCCAACCTTTGACCTCTGCCTC
AACACTCACCAGGCCAGAGGTTCCCCAACCCCCGAGGAACCTCCTGGAGGCTCTGGAACAGCGAATGGAG
CGGTACCATGTGGCTGCAGCCCAGGCCAAGGCCAAGGGTGACCAGCGGAAGGCACGCATGCATGAACGAA
TTGTCAAGCAATACCAAGACGCCATTCGTGCCCACAAGGCAGGCCGAGCTGTGGATGTGGCGGAGCTGCC
AGTGCCCCCAGGCTTCCCCCCAATGCAGGGTTTGGAGTCTGCAGAGCCCTCTCAACAGAGCCTAGTGGGT
GTCCTGGAAACTGCCATGAGGCTTGCCAACCACGACGAAGGCTCGGATGACGAAGAGGAGGAGACTCCTA
AGAAGCAGAATACCCCTGCTGCCTCCACAACCCAGCTGAAGTCCTCGCCCTCCAAAGCACCTCCATCAGG
ACCAGCCCCAGCCGGCAAAGCTGCCCCCAAGGGCACATCCAACAGAGCCCAGCAGCAGCTGGCCTTCCTG
GAGGGCCGTAAGAAGCAGCTCCTGCAGGCCGCGCTGCGTGCCAAGCAAAAGAACGACGTAGAAGGCGCCA
AGATGCACCTGCGCCAGGCCAAAGGGCTAGAGCCCATGCTAGAGGCCTCTCGCAATGGACTGCCTGTGGA
CATTGCCAAGGTGCCACCTGCTCCTGTCAACAAGGACGACTTTGTGCTGGTGCAGCGGCCTGGCCCAGGC
TTGTCTCAGGAAGCTGTGCGTCGCTATGGGGAACTTACCAAGCTCCTGAGACAGCAACATGAAATGTGTC
TAAACCACTCCACACAGTTCACCCACCTGGGCAACATTGCTGAAACCATTAAGTTCGAGAAGCTGGCAGA
AGACTGTAAGCGGAGCATGGACACCTTAAAACAAGCCTTCGCCCGCAGTCTGCCCACACCCGCAGCCCGC
TTTGAGCAGAGGACCTTCAGTGTCATCAAGGTCTTTCCGGACTTGAGCAACAGTGACATGCTCCTGTTTA
TCGTGAAGGGCATCAACTTGCCCACACCCACAGGGCTGTCCCCCAGTGACCTGGATGCCTTTGTCCGCTT
TGACTTCCCTTATCCCAATGTGGAAGAAGCTCAGAAAGACAAGACCAGTGTGATCAAAAACACAGACTCC
CCTGAATTTAAGGAGCAGTTCAAACTCTGCATCAACCGTGGCCACCGTGGCTTCCGAAGGGCCATCCAAA
CCAAGGGCATCAAGTTCGAAGTGGTCCACAAGGGGGGGCTGTTCAAGACGGACAGGGTGCTAGGTACAGC
CCAGCTGAAGCTGGGTACGTTGGAAACAGCTTGTGAAGTCCACGAGATCCTGGAGGTTTTGGATGGACGC
CGACCCACGGGGGGGAGGCTTGAAGTGATGGTTCGCATCCGGGAGCCACTGACAGCCCAGCAGTTGGAAA
CTACAACTGAGAGGTGGCTGGTCATTGATCACATCCCAGCAGCTATGCCCACTGTCACTGGGCCCAAAGC
AAAGGCTCCTCTCATACCGGCGTCTTCAAGGGAAGCAGGCAACAGATCAGCACGGCCCCTGCATAGCCTT
AGCGTGTTGGCCTTTGACCAAGAGCGGCTAGAAAGGAAGATCCTGGCCCTGAGGCAGGCACGCCGGCCTG
TGCCTCCAGAAGTGGCCCAGCAGTACCAGGACGTAGTACAGCGTAGCCAATGGCAGAGGGCACAGCTGGA
GCAGGGGGGTGCTGCCCTCCGCAGGGAGTATGCAAGCCATCTGGAGCGCCAGCTGCACTTCTATACAGAG
GCTGCCCGGCGCCTGGGCTACGATGGAAGCAGGGAGGCTGCAAAGGAGGCATTGTATCGGCGGAACCTGG
TGGAGAGCGAGCTGCAGCGACTCCGCAGGTGA

Translation (943 aa):
MHKRNGPQAPPGRGAVTARQLGLLVDFSPDGLMIPEDGINEEELEAEFLALVGGQPQALEKLKGQGPLPM
EAIEKMARLCMRDLDEDEEGTDEDDVEADEDLLAELNEVLGEEQKAVEPLMPVAQPKPSGPNPGVEATLQ
ERLTLYQSALESARQAGDSAKMRRYDRGLKTLENLLVSAKKGNIINEADIPPPVASGKGAAAGHSHTQAT
SQLASVSPPAPESSGTLEAPSTTTPTSAKPQLPPDPCSPLARLQSLQHEYKLAALRAKHQDDTATATRHL
RIAKSFDPVLEALSRGELVDLSRLPPPPDQLSPEPPLPAAQPLTSASTLTRPEVPQPPRNLLEALEQRME
RYHVAAAQAKAKGDQRKARMHERIVKQYQDAIRAHKAGRAVDVAELPVPPGFPPMQGLESAEPSQQSLVG
VLETAMRLANHDEGSDDEEEETPKKQNTPAASTTQLKSSPSKAPPSGPAPAGKAAPKGTSNRAQQQLAFL
EGRKKQLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEASRNGLPVDIAKVPPAPVNKDDFVLVQRPGPG
LSQEAVRRYGELTKLLRQQHEMCLNHSTQFTHLGNIAETIKFEKLAEDCKRSMDTLKQAFARSLPTPAAR
FEQRTFSVIKVFPDLSNSDMLLFIVKGINLPTPTGLSPSDLDAFVRFDFPYPNVEEAQKDKTSVIKNTDS
PEFKEQFKLCINRGHRGFRRAIQTKGIKFEVVHKGGLFKTDRVLGTAQLKLGTLETACEVHEILEVLDGR
RPTGGRLEVMVRIREPLTAQQLETTTERWLVIDHIPAAMPTVTGPKAKAPLIPASSREAGNRSARPLHSL
SVLAFDQERLERKILALRQARRPVPPEVAQQYQDVVQRSQWQRAQLEQGGAALRREYASHLERQLHFYTE
AARRLGYDGSREAAKEALYRRNLVESELQRLRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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