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Report for CCDS39688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39688.1 Public Mus musculus 6 Plekha5 23 108 98 CCDS HistoryNCBI Gene:109135Re-query CCDS DB by CCDS ID:39688.1Re-query CCDS DB by GeneID:109135See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087622.5 ENSMUSP00000084904.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087622.5Link to Ensembl Protein Viewer:ENSMUSP00000084904.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087622Re-query CCDS DB by Protein ID:ENSMUSP00000084904
Original member Current member NCBI NM_144920.3 NP_659169.3 Accepted alive Link to Nucleotide Sequence:NM_144920.3Link to Protein Sequence:NP_659169.3Re-query CCDS DB by Nucleotide ID:NM_144920Re-query CCDS DB by Protein ID:NP_659169Link to BLAST:NP_659169.3

Chromosomal Locations for CCDS 39688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 140424165 140424256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140424377 140424456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140426498 140426555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140524865 140524948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140525839 140525959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140526457 140526561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140528561 140528633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140534462 140534562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140536648 140536763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140537006 140537023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140543720 140544187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140550761 140551223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140552715 140552798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140555951 140556070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140556804 140556857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140563568 140563648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140568846 140568881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140569353 140569415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140570106 140570186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140570321 140570470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140572865 140572966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140577227 140577338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140579430 140579476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140580347 140580535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140581968 140582088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140583833 140583948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140586309 140586500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140589175 140589315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140589646 140589755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140591628 140591764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140593555 140593649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3810 nt):
ATGGCGGCCGACCTGAACCTGGAGTGGATCTGCTCGCTGCCGCGCTCCTGGACGTACGGGATCACTAGGG
GCGGCCGCGTCTTCTTCATCAACGAGGAGGCCAAGAGCACCACCTGGCTACACCCGGTCACCGGCGAGGC
CGTGGTCACCGGGCACCGGCGGCAGAGCACAGATTTGCCCACTGGCTGGGAAGAAGCATATACGTTCGAA
GGTGCAAGATACTATATAAACCACAATGAAAGGAAAGTGACCTGCAAGCATCCGGTTACAGGACAGCCAT
CCCAAGACAACTGTATCTTTGTTGTGAATGATCAGACTGTTGCAACCATGACGTCCGAAGACAAGAAGGA
ACGACCCATAAGTATGATAAATGAAGCTTCCAATTACAACATGGCTTCAGATTATGCAGTGCATCCCATG
AGCCCTGTGGGCAGGACCTCGCGGGCCTCCAAAAAGGTTCATAATTTTGGGAAAAGGTCCAATTCAATTA
AAAGGAACCCTAATGCACCTGTGGTCCGGCGTGGCTGGCTGTATAAGCAGGACAGCACCGGCATGAAGCT
GTGGAAGAAGCGCTGGTTTGTGCTCTCTGACCTTTGCCTTTTCTATTACCGAGATGAGAAGGAGGAGGGT
ATTTTGGGAAGTATCCTGTTGCCTAGTTTTCAGATAGCCATGCTCACTGCTGAGGACCACATCAATCGCA
AATATGCTTTTAAGGCAGCCCACCCAAACATGCGGACCTATTATTTCTGCACCGATACAGGAAAGGAGAT
GGAGCTGTGGATGAAGGCCATGTTAGATGCTGCTCTGGTGCAGACAGAACCTGTGAAAAGAATTACCTTT
AATTTCCGAGTGGACAAGATTACAACTGACAGTGCATCAACCAAAGAAACCAATAACATTCCCAACCACA
GAGTTCTCATTAGACCCGAGGTCCAAAACCATCAGAAGAATAAGGAAATCAGCAAAATTGAAGAAAAAAG
GGCCTTAGAAGCTGAAAGATACGGATTTCAGAAGGACGGGCAAGATAGACCATTAACAAAAATTAACAGT
GTGAAGTTGAACTCCCTGCTATCAGAATATGAAAGCGGGCCAGACTGCCCACCTCAGAATGTACACTACA
GACCCATCAATGTGAATAGTTCTGACGGCAAAGCGGTGAATGTCAGCTTGGCAGATGTCCGGGGTGGGAG
TCACCCAAATGCAGGGCCCCTAGCCACAGAGGCCGACCGAGTCATTCAGAGAACGAATTCAATGCAACAG
CTAGAGCAGTGGATTAAAGTCCAGAAAGGACGGGGTCTTGAAGAAGAGCCCAGAGGAGTAATTTCTTATC
AAACATTGCCAAGAAATATGCCAAGCCACAGAGCCCAGATCCTGGCCCGCTGCCCTGAAGGTTACCGGAC
ACTCCCGAGAAACAGCAAGACCAGACCTGAGAGTATCTGCAGCGTAACCTCTTCTGGTCATGAGAAGACA
GGGCCGGGAGCAGAAGAGAAGCGGCGATCCATGAGAGATGACACCATGTGGCAGCTGTACGAGTGGCAGC
AGCGCCAGTTTTACCACAAGCAGAGCACCCTCCCTCGGCACGGCTGCCTGAGCAGTCCCAAAGCCATGGT
GCAGGTGTCTGACCAGACGATGCACTCCATCCCCACGTCACCTTCCCATGGGTCAGCAGCTGCTTACCAG
GGCTTCTCCCCTCAGCGGACGTACAGGTCAGAAGTGACCTCGCCCATCCAGAGAGGAGATGTGACGATAG
ACCGCAGGCACAGGCCTCATCACCCTAAGCATGTCTATGTAGCTGACAGAAGGTCAATGCCAGCTGGCTT
AACTTTACAGGCTGTTAGTCCCCAGAGCCTCCAAGGCAGAACGCCAGAGGAGCTCACACTGCTGCTAATA
AAGCTGAGACGGCAGCAGGCAGAGCTGAGTAGTGTCCGGGAGCACACCTTAGCACAGCTCATGCAGCTGA
AACTTGAGGCCCACAGCCCAAAGAATGAGATTCTTTCACATCATCTCCAAAGGAACACCATATATTTGGA
TCATCAGATGAAAGAAAATGAACCTATTATCACCATGGTTCACACAATGATTGAGAACTCGGCGCTAAGA
CCACAACTGTACCAACAATTCTTAAGACAGAAGAACAAGATAAGTCTCTATTGTCTGTCACAAGATGAAT
GTAGAGGCACATTATACAAATACAGACCTGAAGAAGCAGGTATTGATGCCAAATTAAGCAGATTGTGTGA
ACAGGATAAAGTGGTCCGAGCGCTGGAGGAGAAGCTGCAGCAGCTGCACAAGGAGAAATACACGCTTGAG
CAAGCCTTGCTGTCAGCCAGCCAAGAGATAGAGATGAATGCTGATAACCCAGCTGCCATTCAAACTGTGG
TGTTGCAGAGGGATGACCTGCAAAACGGACTGCTGAGCACGTGTCGGGAACTCTCCCGAGCCACTGCTGA
GCTGGAACGAGCCTGGAGAGAATATGACAAGTTGGAATATGATGTGACTGTTACCAGGGACCAGATGCAG
GGTCAGCTCGACCGCCTTGGAGAAGTGCAGAGTGAGTCGGCAGGAATTCAACGGGCACAGATTCAAAAGG
AGCTCTGGAGAATTCAAGATGTCATGGAGGGGTTGAGCAAACACAAACAGCAAAGAGGCTCTTCAGAAAC
AGGTCTGGCAGGATCAAAGCCTTTCTCATCAGTTAAGTACAAGAGCGAGGAAGAGGAAGTAGTCCCACCT
CGGCCTCCACTTCCTCGGTCTTATGACTTTACAGAGCAGCCTCCCATAATCCCCCCTCTGCCCAGTGATA
GCAGCTCCTTGCTCTGTTATAGCAGGGGCCCCGTGCATCTGCCTGAAGACAAGAAGATTCATCAAGTTCA
AGGATATCCAAGAAATGGATCTCACTGTGGTCCAGATTATAGACTCTACAAGAGTGAGCCAGAGTTAACC
ACAGTGGCAGAAGTCGATGAATCTAACGGAGAAGAAAAGTCAGAGCCAGTTTCTGAGACAGAAGCTCCAG
TCGTTAAAGGTTCCCATTTTCCAGTCGGAGTTCCTCTGAGAACAAAGTCACCCACACCCGAGTCCTCCAC
GATAGCTTCCTATGTGACCTTGAGGAAGACTAAGAAGATGGTGGAGCTAAGAACGGAAAGACCAAGAAGT
GCCGTGGAGCAGCTGTGTCTGGCTGAGAGTGCTCGACCTAGAATGACTGTGGAAGAGCAGCTAGAGAGGA
TCAGGAGACACCAGCAGGCCTGCCTGAGGGAGAAGAAGAAGGGGCTGAGTGTCCTCGGTGCTTCCGACCC
GTCAGACGTGAGGGACAGTCCACTCAGGCTTACTCAGACTCTAAGGAGGGATGATAACGTTAAGGAGCTA
GACACCGTCCACAGAGAAAATGATGTAAAGCCAGACTACGAGACTCCAGCAGCACAGTGTGCTCACCTAG
AAGACGCTGAACCCCAGAATGCAGACATCGGCAGAAAGCTAAAAAGATCTGAAATGCTTTACACACCTGA
ACCAAATGGAATGGCTTCTGAGGAAGTGACGGAGAAGGAAAGACAGAAAGAGCAGGTGCATGCCGATGGG
TCATGCAGCCCTCAGGAAGAGACGGCCATGACAGAGCATCAGATGGAAGGCCCCCCTGAGGAAGCAGAGA
GTCTTCATGAGGAGGAAGAAACTCTTGCTTCCTGTGAGCCAGCTCCTGAGATTCCTAGGGAGAATCAAAC
CACAGTGAGAAGTCTGTCCCCGTCTCCTGACTCCTCCACGGCAGCAGATCCGCCCACTCCTCCACAGCTC
AGGGAAGGATCGCATTTCATGTGTGTGTAG

Translation (1269 aa):
MAADLNLEWICSLPRSWTYGITRGGRVFFINEEAKSTTWLHPVTGEAVVTGHRRQSTDLPTGWEEAYTFE
GARYYINHNERKVTCKHPVTGQPSQDNCIFVVNDQTVATMTSEDKKERPISMINEASNYNMASDYAVHPM
SPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEG
ILGSILLPSFQIAMLTAEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTEPVKRITF
NFRVDKITTDSASTKETNNIPNHRVLIRPEVQNHQKNKEISKIEEKRALEAERYGFQKDGQDRPLTKINS
VKLNSLLSEYESGPDCPPQNVHYRPINVNSSDGKAVNVSLADVRGGSHPNAGPLATEADRVIQRTNSMQQ
LEQWIKVQKGRGLEEEPRGVISYQTLPRNMPSHRAQILARCPEGYRTLPRNSKTRPESICSVTSSGHEKT
GPGAEEKRRSMRDDTMWQLYEWQQRQFYHKQSTLPRHGCLSSPKAMVQVSDQTMHSIPTSPSHGSAAAYQ
GFSPQRTYRSEVTSPIQRGDVTIDRRHRPHHPKHVYVADRRSMPAGLTLQAVSPQSLQGRTPEELTLLLI
KLRRQQAELSSVREHTLAQLMQLKLEAHSPKNEILSHHLQRNTIYLDHQMKENEPIITMVHTMIENSALR
PQLYQQFLRQKNKISLYCLSQDECRGTLYKYRPEEAGIDAKLSRLCEQDKVVRALEEKLQQLHKEKYTLE
QALLSASQEIEMNADNPAAIQTVVLQRDDLQNGLLSTCRELSRATAELERAWREYDKLEYDVTVTRDQMQ
GQLDRLGEVQSESAGIQRAQIQKELWRIQDVMEGLSKHKQQRGSSETGLAGSKPFSSVKYKSEEEEVVPP
RPPLPRSYDFTEQPPIIPPLPSDSSSLLCYSRGPVHLPEDKKIHQVQGYPRNGSHCGPDYRLYKSEPELT
TVAEVDESNGEEKSEPVSETEAPVVKGSHFPVGVPLRTKSPTPESSTIASYVTLRKTKKMVELRTERPRS
AVEQLCLAESARPRMTVEEQLERIRRHQQACLREKKKGLSVLGASDPSDVRDSPLRLTQTLRRDDNVKEL
DTVHRENDVKPDYETPAAQCAHLEDAEPQNADIGRKLKRSEMLYTPEPNGMASEEVTEKERQKEQVHADG
SCSPQEETAMTEHQMEGPPEEAESLHEEEETLASCEPAPEIPRENQTTVRSLSPSPDSSTAADPPTPPQL
REGSHFMCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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