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Report for CCDS26533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26533.1 Public Mus musculus 13 Cltb 23 108 98 CCDS HistoryNCBI Gene:74325Re-query CCDS DB by CCDS ID:26533.1Re-query CCDS DB by GeneID:74325See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26533.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091609.10 ENSMUSP00000089198.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091609.10Link to Ensembl Protein Viewer:ENSMUSP00000089198.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091609Re-query CCDS DB by Protein ID:ENSMUSP00000089198
Original member Current member NCBI NM_028870.4 NP_083146.1 Accepted alive Link to Nucleotide Sequence:NM_028870.4Link to Protein Sequence:NP_083146.1Re-query CCDS DB by Nucleotide ID:NM_028870Re-query CCDS DB by Protein ID:NP_083146Link to BLAST:NP_083146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083146.1 211 Q6IRU5-2 211 100% 0 0

Chromosomal Locations for CCDS 26533.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54593871 54594042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54598722 54598833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54599044 54599161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54606644 54606690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54611078 54611264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGCTGAGGACTTCGGCTTCTTCTCATCGTCGGAGAGCGGGGCCCCGGAGGCCGCCGAGGAGGACCCAG
CGGCCGCCTTCCTGGCCCAGCAGGAAAGCGAGATTGCTGGCATCGAGAATGACCCGGGTTTCGGGGCACC
TGCCGCCAGCCAGGTGGCCTCTGCGCAGCCGGGACTCGCGAGCGGGGCTGGTTCAGAGGACATGAGTACT
ACAGTCAATGGAGATGTGTTTCAGGAGGCTAACGGGCCTGCCGATGGCTACGCTGCGATTGCCCAGGCGG
ACAGGTTGACTCAGGAGCCCGAGAGCATCCGGAAGTGGAGAGAGGAGCAGAAGAAAAGGCTGCAGGAGTT
AGACGCTGCCTCGAAGGTGACCGAACAGGAGTGGCGGGAGAAGGCCAAGAAAGACCTGGAGGAGTGGAAC
CAGCGCCAAAGTGAACAGGTTGAGAAGAACAAGATCAACAACAGGGCATCGGAAGAGGCTTTTGTGAAAG
AATCCAAGGAGGAGACCCCGGGCACAGAGTGGGAGAAGGTAGCCCAGCTGTGTGACTTCAATCCCAAGAG
CAGCAAGCAGTGTAAAGATGTGTCCCGCCTGCGCTCGGTGCTCATGTCCCTGAAGCAAACACCACTGTCC
CGCTAG

Translation (211 aa):
MAEDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASGAGSEDMST
TVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASKVTEQEWREKAKKDLEEWN
QRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLS
R


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 Genome Browser Links:   Ensembl Genome Browser
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