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Report for CCDS90344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90344.1 Public Mus musculus 7 Ctbp2 23 108 98 CCDS HistoryNCBI Gene:13017Re-query CCDS DB by CCDS ID:90344.1Re-query CCDS DB by GeneID:13017See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90344.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166439.7 ENSMUSP00000127448.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166439.7Link to Ensembl Protein Viewer:ENSMUSP00000127448.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166439Re-query CCDS DB by Protein ID:ENSMUSP00000127448
Original member NCBI NM_001347623.1 NP_001334552.1 Updated not alive Link to Nucleotide Sequence:NM_001347623.1Link to Protein Sequence:NP_001334552.1Re-query CCDS DB by Nucleotide ID:NM_001347623Re-query CCDS DB by Protein ID:NP_001334552
Current member NCBI NM_001347623.2 NP_001334552.1 Accepted alive Link to Nucleotide Sequence:NM_001347623.2Link to Protein Sequence:NP_001334552.1Re-query CCDS DB by Nucleotide ID:NM_001347623Re-query CCDS DB by Protein ID:NP_001334552Link to BLAST:NP_001334552.1

Chromosomal Locations for CCDS 90344.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 132988171 132988351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132989990 132990107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132990431 132990558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132991039 132991169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132991562 132991776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132995159 132995365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132998807 132998951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132999191 132999328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGAACGGCCCCCTGCACCCCCGCCCCCTGGTGGCACTGCTGGATGGCAGAGACTGCACTGTGGAGATGC
CCATCCTGAAGGACCTGGCCACTGTGGCCTTCTGTGATGCACAGTCCACTCAGGAAATCCATGAGAAGGT
GTTGAATGAGGCTGTGGGTGCCATGATGTACCACACCATCACCCTCACCAGGGAAGACCTGGAGAAGTTC
AAGGCCCTGAGAGTGATCGTGCGAATCGGTAGTGGCTACGACAACGTGGACATCAAGGCTGCTGGCGAGC
TCGGGATCGCTGTGTGCAACATCCCATCTGCTGCAGTGGAGGAGACAGCAGATTCGACAGTCTGCCACAT
TCTCAATCTGTATCGGCGGAACACATGGCTCTACCAGGCCCTCCGAGAAGGCACTCGAGTACAGAGTGTG
GAACAGATCCGTGAGGTCGCCTCAGGAGCTGCTCGGATCCGAGGGGAAACACTGGGCCTCATTGGCTTTG
GTCGCACAGGGCAGGCAGTTGCTGTTCGAGCCAAGGCCTTTGGATTCAGCGTCATATTTTATGACCCCTA
CTTACAGGATGGGATAGAACGATCTCTGGGCGTGCAAAGGGTCTACACCCTGCAGGACTTGCTATATCAG
AGCGACTGCGTCTCCTTGCACTGCAACCTGAACGAGCACAACCATCACCTCATCAATGACTTCACTATCA
AGCAGATGAGGCAAGGTGCATTCCTTGTGAATGCAGCCCGAGGTGGCCTGGTGGATGAGAAAGCCTTAGC
TCAGGCCCTCAAGGAGGGCAGGATACGAGGAGCTGCCCTGGATGTGCACGAGTCTGAGCCCTTCAGCTTC
GCCCAGGGCCCATTGAAGGATGCTCCAAATCTCATCTGCACACCACACACAGCCTGGTACAGTGAACAAG
CATCACTAGAGATGAGGGAAGCAGCAGCCACTGAGATCCGCCGAGCAATCACAGGTCGCATCCCAGAAAG
CTTACGAAACTGTGTCAACAAAGAATTCTTCGTGACTTCAGCTCCTTGGTCAGTCATTGACCAGCAAGCA
ATTCACCCCGAGCTCAATGGTGCCACATACAGGTATCCACCCGGCATTGTAGGTGTGGCTCCAGGAGGGC
TTCCTCCAGCGATGGAAGGGATCATCCCTGGGGGCATCCCCGTGACTCACAACCTCCCCACAGTGGCACA
CCCCTCCCAAGCTCCTTCCCCCAACCAGCCCACAAAACACGGGGACAATCGAGAGCACCCCAACGAGCAA
TAG

Translation (420 aa):
MNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLTREDLEKF
KALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTVCHILNLYRRNTWLYQALREGTRVQSV
EQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERSLGVQRVYTLQDLLYQ
SDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSF
AQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIPESLRNCVNKEFFVTSAPWSVIDQQA
IHPELNGATYRYPPGIVGVAPGGLPPAMEGIIPGGIPVTHNLPTVAHPSQAPSPNQPTKHGDNREHPNEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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