NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9473.1 Public Homo sapiens 13 SOX21 24 110 108 CCDS HistoryNCBI Gene:11166Re-query CCDS DB by CCDS ID:9473.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9473.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376945.4 ENSP00000366144.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376945.4Link to Ensembl Protein Viewer:ENSP00000366144.2Re-query CCDS DB by Nucleotide ID:ENST00000376945Re-query CCDS DB by Protein ID:ENSP00000366144
Original member Current member NCBI NM_007084.4 NP_009015.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007084.4Link to Protein Sequence:NP_009015.1Re-query CCDS DB by Nucleotide ID:NM_007084Re-query CCDS DB by Protein ID:NP_009015Link to BLAST:NP_009015.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009015.1 276 Q9Y651 276 100% 0 0

Chromosomal Locations for CCDS 9473.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 94711219 94712049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGTCCAAGCCGGTGGACCACGTCAAGCGGCCCATGAACGCCTTCATGGTGTGGTCGCGGGCTCAGCGGC
GC
AAGATGGCCCAGGAGAACCCCAAGATGCACAACTCGGAGATCAGCAAGCGCTTGGGCGCCGAGTGGAA
A
CTGCTCACAGAGTCGGAGAAGCGGCCGTTCATCGACGAGGCCAAGCGTCTACGCGCCATGCACATGAAG
GAG
CACCCCGACTACAAGTACCGGCCGCGGCGCAAGCCCAAGACGCTGCTCAAGAAGGACAAGTTCGCCT
TC
CCGGTGCCCTACGGCCTGGGCGGCGTGGCGGACGCCGAGCACCCTGCGCTCAAGGCGGGCGCCGGGCT
G
CACGCGGGGGCGGGCGGCGGCCTGGTGCCTGAGTCGCTGCTCGCCAATCCCGAGAAGGCGGCCGCGGCC
GCC
GCCGCTGCCGCCGCACGCGTCTTCTTCCCGCAGTCGGCCGCTGCCGCCGCCGCTGCCGCCGCCGCCG
CC
GCCGCGGGCAGCCCCTACTCGCTGCTCGACCTGGGCTCCAAAATGGCAGAGATCTCGTCGTCCTCGTC
C
GGCCTCCCGTACGCGTCGTCGCTGGGCTACCCGACCGCGGGCGCGGGCGCCTTCCACGGCGCGGCGGCG
GCG
GCTGCAGCGGCGGCCGCCGCCGCCGGGGGGCACACGCACTCGCACCCCAGCCCGGGCAACCCGGGCT
AC
ATGATCCCGTGCAACTGCAGCGCGTGGCCCAGCCCCGGGCTGCAGCCGCCGCTCGCCTACATCCTGCT
G
CCGGGCATGGGCAAGCCCCAGCTGGACCCCTACCCCGCGGCCTACGCTGCCGCGCTATGA


Translation (276 aa):
MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMK
E
HPDYKYRPRRKPKTLLKKDKFAFPVPYGLGGVADAEHPALKAGAGLHAGAGGGLVPESLLANPEKAAAA
A
AAAAARVFFPQSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAGAGAFHGAAA
A
AAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQPPLAYILLPGMGKPQLDPYPAAYAAAL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser