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Report for CCDS36728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36728.1 Public Mus musculus 13 Brd9 23 108 98 CCDS HistoryNCBI Gene:105246Re-query CCDS DB by CCDS ID:36728.1Re-query CCDS DB by GeneID:105246See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099384.3 ENSMUSP00000096982.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099384.3Link to Ensembl Protein Viewer:ENSMUSP00000096982.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099384Re-query CCDS DB by Protein ID:ENSMUSP00000096982
Original member NCBI NM_001024508.3 NP_001019679.2 Updated not alive Link to Nucleotide Sequence:NM_001024508.3Link to Protein Sequence:NP_001019679.2Re-query CCDS DB by Nucleotide ID:NM_001024508Re-query CCDS DB by Protein ID:NP_001019679
Current member NCBI NM_001024508.4 NP_001019679.2 Accepted alive Link to Nucleotide Sequence:NM_001024508.4Link to Protein Sequence:NP_001019679.2Re-query CCDS DB by Nucleotide ID:NM_001024508Re-query CCDS DB by Protein ID:NP_001019679Link to BLAST:NP_001019679.2

Chromosomal Locations for CCDS 36728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 73937894 73937945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73938434 73938648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73938865 73938997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73940237 73940297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73940646 73940790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73941944 73942054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73942691 73942806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73944726 73944858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73946084 73946159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73947677 73947772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73950075 73950207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73951534 73951645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73954545 73954583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73955422 73955524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73957713 73957880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73960238 73960338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGGGCAAAAAGCACAAGAAGCACAAGGCGGAATGGCGCTCGTCCTACGAAGATTATACAGACACGCCAC
TGGAGAAGCCTCTGAAGCTGGTGCTCAAGGTGGGAGGAAGTGAAGTGACAGAGCTCTCAGGATCTGGCCA
CGACTCCAGCTACTACGACGATCGCTCAGACCACGAACGGGAGAGACACAGAGAAAAGAAGAAAAAGAAG
AAGAAAAAGTCAGAGAAGGAGAAGCACCTCGATGAGGAGGAGAGGAGGAAGCGGAAGGAAGAGAAGAAAC
GGAAACGGGAGAAGGAACACTGCGACTCAGAGGGGGAGGCTGATGCTTTCGACCCTGGAAAGAAGGTGGA
GGTGGAGCCACCCCCAGACCGACCAGTGAGAGCCTGCCGAACACAGCCAGCTGAGAACGAGAGCACACCT
ATCCAGAGGCTTCTGGAACACTTCCTCCGCCAGCTACAGAGAAAAGATCCTCATGGATTTTTTGCTTTTC
CTGTTACGGATGCAATTGCTCCTGGGTATTCAATGATAATAAAACATCCTATGGACTTTGGCACGATGAA
AGACAAGATTGTAGCTAATGAATATAAATCAGTCACAGAATTTAAGGCAGATTTCAAATTAATGTGTGAT
AATGCGATGACGTACAATAGACCAGACACCGTGTACTACAAATTAGCCAAGAAGATCCTGCACGCGGGCT
TTAAGATGATGAGCAAACAGGCAGCTCTCTTGGGCAGTGAAGACCCAGCAGCTGAGGAACCTGTTCCCGA
GGTTGTCCCAGTGCAAGTAGAAACTACCAAGAAATCCAAAAAGCCGAGTAGAGAAGTTATCAGCTGCATG
TTTGAGCCTGAAGGGAATGCCTGCAGCCTGACAGACAGCACGGCAGAGGAGCATGTGCTAGCCCTGGTAG
AGCACGCAGCTGATGAGGCTCGGGACAGGATTAACCGGTTTCTCCCGGGTGGCAAGATGGGGTACCTGAA
GAAGCTTGGAGATGGAAGTCTGCTCTACAGCGTGGTGAACGCACCTGAGCCTGATGCTGATGAGGAGGAG
ACACACCCTGTGGACCTGAGTTCACTGTCTAGCAAGTTGCTCCCAGGTTTTACAACATTGGGTTTCAAAG
ATGAAAGAAGAAATAAAGTCACATTCCTCTCCAGTGCCAGCACTGCACTTTCAATGCAGAACAACTCTGT
GTTTGGGGACCTGAAGTCAGATGAGATGGAGCTTCTGTATTCCGCCTATGGAGATGAGACTGGTGTGCAG
TGTGCACTGAGCCTGCAGGAATTCGTGAAGGATGCTGGAAGCTATAGCAAGAAGATGGTAGATGACCTCC
TGGACCAAATCACAGGTGGTGATCACTCAAGGATGATCTTCCAGCTGAAGCAGAGGAGGAGCATCCCCAT
GAGACCTGCAGATGAGATGAAGGTTGGGGATCCACTGGGAGAGAGTGGTGGCCCTGTTCTGGACTTCATG
TCAATGAAACAGTATCCTGATGTCTCCCTGGATGTGTCCATGCTCAGCTCTCTCGGGAAAGTAAAGAAGG
AGCTGGACCATGAAGATAGCCACTTGAACTTGGATGAGACAGCCAGGCTCCTGCAGGACTTACACGAAGC
ACAAGCAGAGCGAGGAGGCTCTCGGCCATCCTCCAACCTTAGCTCTCTGTCCACTGCCTCTGAGAGGGAG
CATCCTCCTCCAGGAAGTCCTTCTCGCCTTAGTGTTGGGGAGCAGCCGGATGTCGCCCACGACCCTTATG
AATTCCTTCAGTCTCCAGAACCTGCAGCTCCTGCCAAGAACTAA

Translation (597 aa):
MGKKHKKHKAEWRSSYEDYTDTPLEKPLKLVLKVGGSEVTELSGSGHDSSYYDDRSDHERERHREKKKKK
KKKSEKEKHLDEEERRKRKEEKKRKREKEHCDSEGEADAFDPGKKVEVEPPPDRPVRACRTQPAENESTP
IQRLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCD
NAMTYNRPDTVYYKLAKKILHAGFKMMSKQAALLGSEDPAAEEPVPEVVPVQVETTKKSKKPSREVISCM
FEPEGNACSLTDSTAEEHVLALVEHAADEARDRINRFLPGGKMGYLKKLGDGSLLYSVVNAPEPDADEEE
THPVDLSSLSSKLLPGFTTLGFKDERRNKVTFLSSASTALSMQNNSVFGDLKSDEMELLYSAYGDETGVQ
CALSLQEFVKDAGSYSKKMVDDLLDQITGGDHSRMIFQLKQRRSIPMRPADEMKVGDPLGESGGPVLDFM
SMKQYPDVSLDVSMLSSLGKVKKELDHEDSHLNLDETARLLQDLHEAQAERGGSRPSSNLSSLSTASERE
HPPPGSPSRLSVGEQPDVAHDPYEFLQSPEPAAPAKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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