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Report for CCDS24931.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24931.1 Public Mus musculus 11 Acadvl 23 108 98 CCDS HistoryNCBI Gene:11370Re-query CCDS DB by CCDS ID:24931.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24931.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102574.9 ENSMUSP00000099634.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102574.9Link to Ensembl Protein Viewer:ENSMUSP00000099634.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102574Re-query CCDS DB by Protein ID:ENSMUSP00000099634
Original member Current member NCBI NM_017366.3 NP_059062.1 Accepted alive Link to Nucleotide Sequence:NM_017366.3Link to Protein Sequence:NP_059062.1Re-query CCDS DB by Nucleotide ID:NM_017366Re-query CCDS DB by Protein ID:NP_059062Link to BLAST:NP_059062.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059062.1 656 P50544 656 100% 0 0

Chromosomal Locations for CCDS 24931.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70010296 70010436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70010525 70010600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70010698 70010770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70010849 70010921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70011006 70011078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70011168 70011265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70011345 70011446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70011536 70011598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70011684 70011770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70012186 70012290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70012448 70012646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70012958 70013083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70013172 70013301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70013434 70013578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70014245 70014379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70014479 70014543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70014631 70014703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70014793 70014858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70015117 70015195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70015263 70015324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGCAGTCGGCTCGGATGACCCCGAGTGTGGGGCGACAGCTGCTGCGGCTGGGGGCCCGAAGCTCGCGAT
CTACTACTGTGCTTCAGGGACAACCCCGGCCTATCTCTGCCCAGCGACTTTATGCCAGGGAGGCCACTCA
GGCAGTTCTGGACAAGCCAGAAACCCTCTCCTCTGATGCTTCCACCAGAGAAAAACCAGCCAGGGCAGAA
TCGAAGTCCTTTGCTGTGGGGATGTTCAAAGGCCAGCTTACCATTGATCAGGTGTTCCCATACCCATCTG
TGCTCAGTGAAGAACAGGCACAATTTCTCAAAGAGCTGGTGGGACCAGTGGCCCGGTTCTTTGAGGAAGT
GAATGACCCTGCCAAGAACGACGCCTTGGAGAAGGTGGAGGACGACACTTTGCAGGGACTCAAGGAACTG
GGGGCATTTGGCCTGCAAGTACCCAGCGAGCTGGGTGGTTTGGGCCTCTCTAATACCCAGTATGCTCGCT
TGGCAGAGATTGTGGGCATGCATGACCTTGGTGTTAGCGTTACCCTGGGAGCTCATCAGAGCATCGGTTT
CAAAGGCATCTTGCTCTATGGCACAAAGGCCCAGAGAGAAAAATACCTTCCCAGAGTGGCATCTGGGCAG
GCTTTGGCTGCTTTCTGCCTAACAGAGCCCTCGAGTGGATCCGATGTAGCCTCCATCCGAAGCTCAGCCA
TACCCAGCCCCTGTGGAAAATATTACACTCTCAATGGGAGCAAGATCTGGATCAGTAATGGGGGCCTGGC
TGACATTTTCACTGTCTTTGCCAAGACGCCAATTAAAGATGCAGCCACGGGGGCCGTGAAAGAGAAGATC
ACAGCTTTTGTAGTGGAAAGGAGCTTCGGAGGGGTTACCCATGGGCTCCCTGAAAAGAAGATGGGCATCA
AAGCATCTAACACGTCAGAGGTGTACTTTGATGGAGTGAAGGTGCCATCAGAGAATGTGCTAGGAGAGGT
GGGAGATGGCTTCAAGGTTGCTGTCAACATCCTCAACAACGGAAGATTCGGGATGGCTGCAACCCTCGCA
GGCACCATGAAATCCCTCATTGCCAAGGCGGTTGATCATGCTACTAATCGTACCCAGTTTGGGGACAAAA
TTCACAACTTTGGGGTGATCCAGGAAAAGCTGGCTCGGATGGCTATTCTGCAGTATGTGACTGAGTCCAT
GGCTTACATGCTGAGTGCCAACATGGACCAGGGATTCAAAGACTTCCAGATAGAAGCCGCCATCAGCAAA
ATCTTTTGCTCGGAGGCGGCCTGGAAAGTGGCAGATGAGTGCATCCAAATAATGGGGGGCATGGGCTTCA
TGAAGGAACCAGGGGTGGAGCGTGTGCTCCGAGATATTCGAATCTTCCGGATCTTTGAAGGGGCAAATGA
CATTCTTCGACTGTTTGTGGCTCTGCAAGGCTGTATGGACAAAGGAAAGGAACTCACTGGGCTGGGCAAT
GCCCTGAAGAATCCTTTTGGAAACGTTGGCCTCCTGATGGGAGAAGCAGGCAAACAGCTGAGACGGAGGA
CAGGAATCGGCAGTGGTTTGAGTCTGTCAGGGATTGTCCACCCAGAGTTAAGTCGCAGTGGTGAACTGGC
AGTGCAGGCTCTGGATCAATTTGCCACCGTGGTGGAGGCCAAGCTGGTGAAACACAAGAAAGGGATTGTC
AACGAGCAGTTCCTGCTGCAGCGACTGGCGGACGGCGCCATTGACCTCTATGCCATGGTGGTGGTTCTGT
CCAGAGCCTCAAGGTCCCTGAGTGAGGGCTACCCGACGGCACAGCATGAGAAAATGCTCTGTGATAGCTG
GTGCATTGAGGCTGCAACTCGGATCCGAGAAAACATGGCCAGTCTGCAGTCCAGCCCTCAGCATCAGGAG
CTCTTCCGGAACTTCAGAAGCATCTCCAAGGCCATGGTGGAGAATGGTGGCCTGGTCACCGGTAACCCCC
TGGGAATCTGA

Translation (656 aa):
MQSARMTPSVGRQLLRLGARSSRSTTVLQGQPRPISAQRLYAREATQAVLDKPETLSSDASTREKPARAE
SKSFAVGMFKGQLTIDQVFPYPSVLSEEQAQFLKELVGPVARFFEEVNDPAKNDALEKVEDDTLQGLKEL
GAFGLQVPSELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQREKYLPRVASGQ
ALAAFCLTEPSSGSDVASIRSSAIPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIKDAATGAVKEKI
TAFVVERSFGGVTHGLPEKKMGIKASNTSEVYFDGVKVPSENVLGEVGDGFKVAVNILNNGRFGMAATLA
GTMKSLIAKAVDHATNRTQFGDKIHNFGVIQEKLARMAILQYVTESMAYMLSANMDQGFKDFQIEAAISK
IFCSEAAWKVADECIQIMGGMGFMKEPGVERVLRDIRIFRIFEGANDILRLFVALQGCMDKGKELTGLGN
ALKNPFGNVGLLMGEAGKQLRRRTGIGSGLSLSGIVHPELSRSGELAVQALDQFATVVEAKLVKHKKGIV
NEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGYPTAQHEKMLCDSWCIEAATRIRENMASLQSSPQHQE
LFRNFRSISKAMVENGGLVTGNPLGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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