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Report for CCDS37806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37806.1 Public Mus musculus 18 Spink14 23 108 98 CCDS HistoryNCBI Gene:433178Re-query CCDS DB by CCDS ID:37806.1Re-query CCDS DB by GeneID:433178See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37806.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060328.8 ENSMUSP00000057781.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060328.8Link to Ensembl Protein Viewer:ENSMUSP00000057781.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000060328Re-query CCDS DB by Protein ID:ENSMUSP00000057781
Original member Current member EBI ENSMUST00000162265.2 ENSMUSP00000125319.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162265.2Link to Ensembl Protein Viewer:ENSMUSP00000125319.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162265Re-query CCDS DB by Protein ID:ENSMUSP00000125319
Original member Current member NCBI NM_001039218.2 NP_001034307.2 Accepted alive Link to Nucleotide Sequence:NM_001039218.2Link to Protein Sequence:NP_001034307.2Re-query CCDS DB by Nucleotide ID:NM_001039218Re-query CCDS DB by Protein ID:NP_001034307Link to BLAST:NP_001034307.2

Chromosomal Locations for CCDS 37806.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 44028759 44028822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44029545 44029588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44030875 44031011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44031863 44031908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (291 nt):
ATGGTCAAATATTTCCAGTGCTCAGTTTTGTTCTCCATTATGCTCCACTTGGTTATCCTGGCTGCTCCAG
GTGCTCGAGTTTGGTGGCCTACACATGGACTTATTAAGATCAAATGTCCTTATAAGAAAGTAAATTTGAG
TTGGTTCAACAAAACAGTGGACCCCTGCCCTGACCTAAAACAACCCATCTGCGGCACCAATTTTGTAACC
TATGATAATCCCTGCATCTTGTGTGTTGAGAGCTTGAAATCTGGGGGAAGAATTAGATATTACTACAATG
GAAGGTGCTAG

Translation (96 aa):
MVKYFQCSVLFSIMLHLVILAAPGARVWWPTHGLIKIKCPYKKVNLSWFNKTVDPCPDLKQPICGTNFVT
YDNPCILCVESLKSGGRIRYYYNGRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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