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Report for CCDS29769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29769.1 Public Mus musculus 19 Htr7 23 108 98 CCDS HistoryNCBI Gene:15566Re-query CCDS DB by CCDS ID:29769.1Re-query CCDS DB by GeneID:15566See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29769.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164639.7 ENSMUSP00000126847.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164639.7Link to Ensembl Protein Viewer:ENSMUSP00000126847.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164639Re-query CCDS DB by Protein ID:ENSMUSP00000126847
Original member Current member NCBI NM_008315.3 NP_032341.2 Accepted alive Link to Nucleotide Sequence:NM_008315.3Link to Protein Sequence:NP_032341.2Re-query CCDS DB by Nucleotide ID:NM_008315Re-query CCDS DB by Protein ID:NP_032341Link to BLAST:NP_032341.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032341.2 448 P32304 448 100% 0 0

Chromosomal Locations for CCDS 29769.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35960357 35960399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35969309 35970064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36056706 36057253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGATGGACGTTAACAGCAGCGGCCGCCCCGACCTCTACGGCCATCTCCGCTCTCTCATCCTGCCGGAGG
TGGGGCGCAGGCTGCAGGACCTGAGCCCCGACGGTGGCGCCCACTCGGTGGTGAGCTCCTGGATGCCGCA
CCTGCTGAGCGGCTTCCCAGAGGTGACAGCTAGCCCGGCGCCCACCTGGGACGCGCCCCCGGACAATGTC
TCCGGCTGCGGGGAGCAGATCAACTATGGCAGAGTCGAGAAAGTTGTGATCGGCTCCATCCTGACGCTCA
TCACGCTGCTGACGATCGCGGGCAACTGCCTGGTGGTGATCTCGGTGTGCTTTGTCAAGAAGCTCCGCCA
GCCCTCCAACTACCTGATTGTGTCCCTGGCGCTGGCTGACCTCTCGGTGGCCGTGGCGGTCATGCCTTTC
GTTAGTGTCACGGACCTCATCGGGGGCAAGTGGATCTTCGGCCACTTCTTCTGCAACGTCTTCATCGCCA
TGGACGTCATGTGCTGCACGGCCTCGATCATGACCCTGTGCGTGATCAGCATCGACAGGTACCTTGGGAT
CACCAGGCCCCTCACGTACCCCGTGAGGCAGAATGGGAAATGTATGGCCAAAATGATTCTGTCGGTCTGG
CTTCTCTCTGCCTCCATCACCTTACCTCCTCTCTTCGGATGGGCTCAGAATGTGAACGATGACAAAGTGT
GCTTGATCAGCCAGGATTTTGGCTACACGATCTACTCCACCGCAGTGGCGTTTTATATCCCCATGTCGGT
CATGCTGTTCATGTACTATCAGATTTACAAGGCCGCCAGGAAGAGCGCAGCCAAACACAAGTTCTCAGGC
TTCCCACGCGTGCAGCCGGAGAGCGTCATCTCCCTGAATGGCGTGGTGAAACTCCAGAAGGAGGTGGAAG
AGTGTGCGAACCTTTCGAGACTGCTCAAACACGAAAGGAAAAACATTTCCATCTTCAAGAGGGAACAGAA
AGCAGCCACTACCTTGGGGATCATCGTGGGAGCCTTCACGGTGTGCTGGCTGCCGTTTTTCCTCTTGTCC
ACAGCAAGGCCCTTTATCTGTGGCACCTCCTGTAGCTGCATCCCGCTGTGGGTGGAGAGGACATGTCTGT
GGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATATATGCCTTCTTCAACCGGGACCTGAGGACCAC
CTATCGTAGCCTACTCCAGTGCCAGTACCGGAATATCAACCGGAAGCTCTCTGCTGCAGGCATGCACGAA
GCCCTGAAACTTGCTGAGAGGCCTGAGAGAAGCGAGTTTGTGCTACAAAACTGTGACCACTGTGGGAAAA
AAGGTCATGATACATGA

Translation (448 aa):
MMDVNSSGRPDLYGHLRSLILPEVGRRLQDLSPDGGAHSVVSSWMPHLLSGFPEVTASPAPTWDAPPDNV
SGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAVMPF
VSVTDLIGGKWIFGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAKMILSVW
LLSASITLPPLFGWAQNVNDDKVCLISQDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFSG
FPRVQPESVISLNGVVKLQKEVEECANLSRLLKHERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLS
TARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYRNINRKLSAAGMHE
ALKLAERPERSEFVLQNCDHCGKKGHDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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