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Report for CCDS24189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24189.1 Public Mus musculus 10 Lrrc10 23 108 98 CCDS HistoryNCBI Gene:237560Re-query CCDS DB by CCDS ID:24189.1Re-query CCDS DB by GeneID:237560See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073834.4 ENSMUSP00000073502.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073834.4Link to Ensembl Protein Viewer:ENSMUSP00000073502.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000073834Re-query CCDS DB by Protein ID:ENSMUSP00000073502
Original member Current member NCBI NM_146242.2 NP_666354.1 Accepted alive Link to Nucleotide Sequence:NM_146242.2Link to Protein Sequence:NP_666354.1Re-query CCDS DB by Nucleotide ID:NM_146242Re-query CCDS DB by Protein ID:NP_666354Link to BLAST:NP_666354.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666354.1 274 Q8K3W2 274 100% 0 0

Chromosomal Locations for CCDS 24189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 117045423 117046247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGGAAACACCATCCGGGCCTTCGTGGCTTTCATCCCCACCGACCGCTGCCAGAGTTATGTGGTGGGAG
ACCTCCGGGAGATGCCCCTGGACAGGATGGTGGATCTGAGCGGGAGCCAGCTGCGTCGCTTCCCACTGCA
CGTGTGCTCCTTCACGGAGCTGGTGAAGCTCTACCTCAGCGACAACCACCTTCACAGCCTGCCTCCCGAC
CTGGCACAGCTGCAGAACCTGCAGATCCTGGCCTTGGATTTCAACAACTTCAAAGCTCTCCCCCGGGTGG
TGTGTACCTTGAAACAGCTCTGCATCCTCTACCTGGGCAATAACAAACTCTGTGACCTCCCGGATGAGCT
CAGCCTGCTCCAGAACCTACGGACCCTGTGGCTCGAATCCAACTGCCTCACCCGGCTGCCCGATGTGGTG
TGTGAGCTGAGTCTCCTTAAAACCCTGCATGCCGGTTCCAACGCCCTACGTCTGCTACCCGGCCAGCTCC
GGCGCCTGCGCGAGCTCAGGACCATCTGGCTCTCCGGCAATCAGCTAGCTGACTTCCCCTCGGTACTGCT
TCGCATGCCCTTTCTGGAGGTGATCGACGTGGATCGGAACAGTATCCGCTACTTCCCCAGCCTGGCCCAC
TTGACAAATCTGAAGCTGGTCATCTATGACCACAATCCTTGCAGAAATGCCCCCAAGGTGGGCAAAGGGG
TTCGCCGTGTTGGGAGATGGGCAGAGGAGACACCAGAGCCTGACCCCAGAAAAGCTAGGCGGTACGCACT
GGCCAAGGAAGAGAATCAAGAGCCACCTCCTCCCCTTCTTCCTTCCAGCTCTTGA

Translation (274 aa):
MGNTIRAFVAFIPTDRCQSYVVGDLREMPLDRMVDLSGSQLRRFPLHVCSFTELVKLYLSDNHLHSLPPD
LAQLQNLQILALDFNNFKALPRVVCTLKQLCILYLGNNKLCDLPDELSLLQNLRTLWLESNCLTRLPDVV
CELSLLKTLHAGSNALRLLPGQLRRLRELRTIWLSGNQLADFPSVLLRMPFLEVIDVDRNSIRYFPSLAH
LTNLKLVIYDHNPCRNAPKVGKGVRRVGRWAEETPEPDPRKARRYALAKEENQEPPPPLLPSSS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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