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Report for CCDS38525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38525.1 Public Mus musculus 3 S100a11 23 108 98 CCDS HistoryNCBI Gene:20195Re-query CCDS DB by CCDS ID:38525.1Re-query CCDS DB by GeneID:20195See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38525.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029515.4 ENSMUSP00000029515.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029515.4Link to Ensembl Protein Viewer:ENSMUSP00000029515.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029515Re-query CCDS DB by Protein ID:ENSMUSP00000029515
Original member Current member NCBI NM_016740.3 NP_058020.1 Accepted alive Link to Nucleotide Sequence:NM_016740.3Link to Protein Sequence:NP_058020.1Re-query CCDS DB by Nucleotide ID:NM_016740Re-query CCDS DB by Protein ID:NP_058020Link to BLAST:NP_058020.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058020.1 98 P50543 98 100% 0 0

Chromosomal Locations for CCDS 38525.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 93524059 93524199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 93525992 93526147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGCCTACAGAGACTGAGAGATGCATTGAGTCCCTGATTGCTGTTTTCCAAAAGTACAGCGGGAAGGATG
GAAACAACACTCAACTCTCCAAAACTGAATTCCTTTCCTTCATGAACACAGAGCTGGCTGCCTTCACAAA
GAACCAGAAGGATCCTGGTGTCCTTGACCGCATGATGAAGAAGCTGGACCTCAACTGTGACGGGCAGCTA
GATTTCCAAGAGTTTCTCAACCTCATTGGTGGCTTAGCTATAGCGTGCCATGATTCTTTCATCCAAACTT
CCCAGAAGCGAATCTAA

Translation (98 aa):
MPTETERCIESLIAVFQKYSGKDGNNTQLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMKKLDLNCDGQL
DFQEFLNLIGGLAIACHDSFIQTSQKRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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