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Report for CCDS39332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39332.1 Public Mus musculus 5 Epo 23 108 98 CCDS HistoryNCBI Gene:13856Re-query CCDS DB by CCDS ID:39332.1Re-query CCDS DB by GeneID:13856See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031723.13 ENSMUSP00000031723.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031723.13Link to Ensembl Protein Viewer:ENSMUSP00000031723.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031723Re-query CCDS DB by Protein ID:ENSMUSP00000031723
Original member Current member EBI ENSMUST00000111038.7 ENSMUSP00000106667.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111038.7Link to Ensembl Protein Viewer:ENSMUSP00000106667.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111038Re-query CCDS DB by Protein ID:ENSMUSP00000106667
Original member Current member NCBI NM_007942.2 NP_031968.1 Accepted alive Link to Nucleotide Sequence:NM_007942.2Link to Protein Sequence:NP_031968.1Re-query CCDS DB by Nucleotide ID:NM_007942Re-query CCDS DB by Protein ID:NP_031968Link to BLAST:NP_031968.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031968.1 192 P07321 192 100% 0 0

Chromosomal Locations for CCDS 39332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137483085 137483240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137483981 137484160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137484486 137484572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137485035 137485177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137485733 137485745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGGGGTGCCCGAACGTCCCACCCTGCTGCTTTTACTCTCCTTGCTACTGATTCCTCTGGGCCTCCCAG
TCCTCTGTGCTCCCCCACGCCTCATCTGCGACAGTCGAGTTCTGGAGAGGTACATCTTAGAGGCCAAGGA
GGCAGAAAATGTCACGATGGGTTGTGCAGAAGGTCCCAGACTGAGTGAAAATATTACAGTCCCAGATACC
AAAGTCAACTTCTATGCTTGGAAAAGAATGGAGGTGGAAGAACAGGCCATAGAAGTTTGGCAAGGCCTGT
CCCTGCTCTCAGAAGCCATCCTGCAGGCCCAGGCCCTGCTAGCCAATTCCTCCCAGCCACCAGAGACCCT
TCAGCTTCATATAGACAAAGCCATCAGTGGTCTACGTAGCCTCACTTCACTGCTTCGGGTACTGGGAGCT
CAGAAGGAATTGATGTCGCCTCCAGATACCACCCCACCTGCTCCACTCCGAACACTCACAGTGGATACTT
TCTGCAAGCTCTTCCGGGTCTACGCCAACTTCCTCCGGGGGAAACTGAAGCTGTACACGGGAGAGGTCTG
CAGGAGAGGGGACAGGTGA

Translation (192 aa):
MGVPERPTLLLLLSLLLIPLGLPVLCAPPRLICDSRVLERYILEAKEAENVTMGCAEGPRLSENITVPDT
KVNFYAWKRMEVEEQAIEVWQGLSLLSEAILQAQALLANSSQPPETLQLHIDKAISGLRSLTSLLRVLGA
QKELMSPPDTTPPAPLRTLTVDTFCKLFRVYANFLRGKLKLYTGEVCRRGDR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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