NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8736.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8736.2 Public Homo sapiens 12 SLC2A13 24 110 108 CCDS HistoryNCBI Gene:114134Re-query CCDS DB by CCDS ID:8736.2See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 8736.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8736.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000280871.9 ENSP00000280871.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000280871.9Link to Ensembl Protein Viewer:ENSP00000280871.4Re-query CCDS DB by Nucleotide ID:ENST00000280871Re-query CCDS DB by Protein ID:ENSP00000280871
Original member Current member NCBI NM_052885.4 NP_443117.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052885.4Link to Protein Sequence:NP_443117.3Re-query CCDS DB by Nucleotide ID:NM_052885Re-query CCDS DB by Protein ID:NP_443117Link to BLAST:NP_443117.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443117.3 648 Q96QE2 648 100% 0 0

Chromosomal Locations for CCDS 8736.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 39760026 39760252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 39764460 39764612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 39764737 39764858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 39830103 39830228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 39864762 39864882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 39871798 39871961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 39951257 39951365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40028301 40028509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40048051 40048210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40105253 40105808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGTCCCGCAAGGCAAGCGAGAATGTGGAGTACACGCTGCGGAGCCTGAGCAGCCTGATGGGCGAGCGGC
GCAGGAAGCAGCCGGAGCCGGACGCGGCGAGCGCGGCCGGGGAGTGCAGCCTCCTGGCTGCCGCCGAATC
GAGCACCAGCCTGCAGAGCGCGGGCGCGGGCGGCGGCGGCGTCGGGGACCTGGAGCGCGCGGCGCGGCGG
CAGTTCCAGCAGGACGAGACCCCCGCCTTCGTGTACGTGGTGGCCGTCTTCTCCGCGCTGGGCGGCTTCC
TGTTTGGCTATGACACCGGGGTGGTGTCAGGGGCCATGCTGCTGCTCAAGCGGCAGCTCAGTCTGGACGC
GCTGTGGCAGGAGCTGCTGGTGTCCAGCACGGTGGGGGCGGCTGCCGTCTCGGCGCTGGCCGGAGGCGCC
CTCAACGGCGTCTTCGGCCGCCGCGCTGCCATCCTCCTGGCCAGTGCCCTCTTCACCGCCGGCTCCGCGG
TGCTGGCTGCGGCCAACAACAAGGAGACACTGCTCGCCGGCCGCCTGGTCGTGGGACTCGGCATCGGCAT
TGCTTCTATGACAGTGCCAGTGTACATTGCGGAGGTCTCACCACCCAATTTAAGAGGCCGATTAGTCACC
ATTAATACCCTCTTCATCACAGGAGGGCAGTTCTTTGCAAGTGTTGTTGATGGAGCCTTCAGTTATCTCC
AGAAGGATGGATGGAGGTACATGTTGGGACTTGCAGCAGTTCCGGCGGTTATACAGTTTTTTGGCTTTCT
CTTTTTGCCTGAAAGCCCTCGATGGCTTATTCAGAAAGGACAGACTCAGAAGGCCCGTAGAATTTTATCT
CAGATGCGTGGTAACCAGACCATTGATGAGGAATATGATAGCATCAAAAACAACATTGAAGAGGAGGAAA
AAGAGGTTGGCTCAGCTGGACCTGTGATCTGCAGAATGCTGAGTTATCCCCCAACTCGCCGAGCTTTAAT
TGTGGGTTGTGGCCTACAAATGTTCCAGCAGCTCTCAGGCATTAACACCATCATGTACTACAGTGCAACC
ATTCTGCAGATGTCTGGTGTTGAAGATGATAGACTTGCAATATGGCTGGCTTCAGTTACAGCCTTCACAA
ATTTCATTTTCACACTTGTGGGAGTCTGGCTTGTTGAGAAGGTGGGCCGCAGAAAGCTTACCTTTGGTAG
TTTAGCAGGTACCACCGTAGCACTCATTATTCTTGCCTTGGGATTTGTGCTATCAGCCCAAGTTTCCCCA
CGCATCACTTTTAAGCCAATAGCTCCGTCAGGTCAGAACGCCACTTGCACAAGATACAGTTACTGTAATG
AATGTATGTTGGATCCAGACTGCGGTTTCTGCTACAAGATGAACAAATCAACTGTCATTGACTCCTCCTG
TGTTCCAGTTAATAAAGCATCTACAAATGAGGCAGCCTGGGGCAGGTGTGAAAATGAAACCAAGTTCAAA
ACAGAAGATATATTTTGGGCTTACAATTTCTGCCCTACTCCATACTCCTGGACTGCACTTCTGGGCCTTA
TTTTATATCTTGTCTTCTTTGCACCTGGAATGGGACCAATGCCTTGGACTGTGAATTCTGAAATATATCC
CCTTTGGGCAAGAAGTACAGGAAATGCATGTTCATCTGGAATAAACTGGATTTTCAATGTCCTGGTTTCA
CTAACATTTTTACACACAGCAGAGTATCTTACATACTATGGAGCTTTCTTCCTCTATGCTGGATTTGCTG
CTGTGGGACTCCTTTTCATCTATGGCTGTCTTCCTGAGACCAAAGGCAAAAAATTAGAGGAAATTGAATC
ACTCTTTGACAACAGGCTATGTACATGTGGCACTTCAGATTCTGATGAAGGGAGATATATTGAATATATT
CGGGTAAAGGGAAGTAACTATCATCTTTCTGACAATGATGCTTCTGATGTGGAATAA

Translation (648 aa):
MSRKASENVEYTLRSLSSLMGERRRKQPEPDAASAAGECSLLAAAESSTSLQSAGAGGGGVGDLERAARR
QFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQELLVSSTVGAAAVSALAGGA
LNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVT
INTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILS
QMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSAT
ILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFVLSAQVSP
RITFKPIAPSGQNATCTRYSYCNECMLDPDCGFCYKMNKSTVIDSSCVPVNKASTNEAAWGRCENETKFK
TEDIFWAYNFCPTPYSWTALLGLILYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVS
LTFLHTAEYLTYYGAFFLYAGFAAVGLLFIYGCLPETKGKKLEEIESLFDNRLCTCGTSDSDEGRYIEYI
RVKGSNYHLSDNDASDVE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH